Annotation Detail for ACSM3
Basic Information Top
| Gene Symbol: | ACSM3 ( SA,SAH ) |
|---|---|
| Gene Full Name: | acyl-CoA synthetase medium-chain family member 3 |
| Band: | 16p12.3 |
| Quick Links | Entrez ID:6296; OMIM: 145505; Uniprot ID:ACSM3_HUMAN; ENSEMBL ID: ENSG00000005187; HGNC ID: 10522 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.706754
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 8 / 564012 | 14 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 75 / 1939121 | 38 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 2 / 34366 | 58 |  |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 12 / 114246 | 105 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 22 / 95842 | 229 |  |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 74 / 3360307 | 22 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 9 / 102680 | 87 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 3 / 29757 | 100 | |
| blood | 4 / 123478 | 32 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 21 / 48801 | 430 | |
| brain | 10 / 1100989 | 9 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 19 / 234472 | 81 | |
| kidney | 40 / 211777 | 188 | |
| larynx | 0 / 24145 | 0 | |
| liver | 10 / 207743 | 48 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 9 / 330442 | 27 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 210377_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 32.8 | |
| Adipocyte | 4.75 | |
| AdrenalCortex | 5.2 | |
| Adrenalgland | 4.3 | |
| Amygdala | 4.9 | |
| Appendix | 5 | |
| AtrioventricularNode | 4.15 | |
| BDCA4+_DentriticCells | 5.25 | |
| Bonemarrow | 4.8 | |
| BronchialEpithelialCells | 4.65 | |
| CD105+_Endothelial | 4.85 | |
| CD14+_Monocytes | 5.1 | |
| CD19+_BCells(neg._sel.) | 5 | |
| CD33+_Myeloid | 6 | |
| CD34+ | 8.45 | |
| CD4+_Tcells | 5.2 | |
| CD56+_NKCells | 5.6 | |
| CD71+_EarlyErythroid | 4.5 | |
| CD8+_Tcells | 4.65 | |
| CardiacMyocytes | 6.55 | |
| Caudatenucleus | 4.3 | |
| Cerebellum | 3.85 | |
| CerebellumPeduncles | 5.7 | |
| CiliaryGanglion | 3.7 | |
| CingulateCortex | 5 | |
| Colorectaladenocarcinoma | 4.75 | |
| DorsalRootGanglion | 4.25 | |
| FetalThyroid | 4.6 | |
| Fetalbrain | 4.7 | |
| Fetalliver | 5.2 | |
| Fetallung | 4 | |
| GlobusPallidus | 3.55 | |
| Heart | 6.85 | |
| Hypothalamus | 5.2 | |
| Kidney | 4.65 | |
| Leukemia_chronicMyelogenousK-562 | 305.3 | |
| Leukemia_promyelocytic-HL-60 | 4.25 | |
| Leukemialymphoblastic(MOLT-4) | 3.8 | |
| Liver | 6.4 | |
| Lung | 5.2 | |
| Lymphnode | 4.05 | |
| Lymphoma_burkitts(Daudi) | 6.2 | |
| Lymphoma_burkitts(Raji) | 6.75 | |
| MedullaOblongata | 4.4 | |
| OccipitalLobe | 4.3 | |
| OlfactoryBulb | 3.8 | |
| Ovary | 15.7 | |
| Pancreas | 4.6 | |
| PancreaticIslet | 5.7 | |
| ParietalLobe | 5.1 | |
| Pituitary | 5.6 | |
| Placenta | 4.85 | |
| Pons | 5.8 | |
| PrefrontalCortex | 5.85 | |
| Prostate | 5.6 | |
| Salivarygland | 3.85 | |
| SkeletalMuscle | 6.4 | |
| Skin | 4.15 | |
| SmoothMuscle | 5.4 | |
| Spinalcord | 5.1 | |
| SubthalamicNucleus | 4.45 | |
| SuperiorCervicalGanglion | 6.7 | |
| TemporalLobe | 4.45 | |
| Testis | 4.1 | |
| TestisGermCell | 4.05 | |
| TestisIntersitial | 4.3 | |
| TestisLeydigCell | 6.25 | |
| TestisSeminiferousTubule | 4.1 | |
| Thalamus | 5 | |
| Thymus | 3.65 | |
| Thyroid | 5.85 | |
| Tongue | 4.85 | |
| Tonsil | 4.7 | |
| Trachea | 3.95 | |
| TrigeminalGanglion | 5 | |
| Uterus | 3.8 | |
| UterusCorpus | 4.8 | |
| WholeBlood | 5.25 | |
| Wholebrain | 3.85 | |
| colon | 4.8 | |
| pineal_day | 5.96 | |
| pineal_night | 5.76 | |
| retina | 5.75 | |
| small_intestine | 4.55 | |
- Probe name: A_24_P934800
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.89 ± 0.65 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.72 ± 0.42 | |
| Basal Part of Pons | 3.43 ± 0.46 | |
| Cerebellar Cortex | 3.64 ± 0.54 | |
| Cerebellar Nuclei | 3.84 ± 0.52 | |
| Claustrum | 3.38 ± 0.66 | |
| Epithalamus | 4.5 ± 0.55 | |
| Frontal Lobe | 3.84 ± 0.49 | |
| Globus Pallidus | 4.41 ± 0.46 | |
| Hypothalamus | 3.93 ± 0.55 | |
| Insula | 3.88 ± 0.41 | |
| Limbic Lobe | 3.67 ± 0.43 | |
| Mesencephalon | 3.89 ± 0.57 | |
| Myelencephalon | 3.82 ± 0.53 | |
| Occipital Lobe | 3.62 ± 0.61 | |
| Parietal Lobe | 3.61 ± 0.6 | |
| Pontine Tegmentum | 3.83 ± 0.56 | |
| Striatum | 4.05 ± 0.52 | |
| Subthalamus | 4.2 ± 0.48 | |
| Temporal Lobe | 3.77 ± 0.58 | |
| Thalamus | 3.82 ± 0.53 | |
| White Matter | 5.13 ± 0.13 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Acsm3 | CB | Cerebellum | 19.01 | |
| 29.99 | | |||
| Acsm3 | CTX | Cerebral cortex | 59.2 | |
| 55.85 | | |||
| Acsm3 | HIP | Hippocampal region | 25.71 | |
| 44.46 | | |||
| Acsm3 | HPF | Hippocampal formation | 26.98 | |
| 40.67 | | |||
| Acsm3 | HY | Hypothalamus | 13.84 | |
| 14.23 | | |||
| Acsm3 | LSX | Lateral septal complex | 6.17 | |
| 8.86 | | |||
| Acsm3 | MB | Midbrain | 16.94 | |
| 18.92 | | |||
| Acsm3 | MY | Medulla | 21.27 | |
| 30.61 | | |||
| Acsm3 | OLF | Olfactory bulb | 34.67 | |
| 31.99 | | |||
| Acsm3 | P | Pons | 16.93 | |
| 25.16 | | |||
| Acsm3 | PAL | Pallidum | 8.26 | |
| 7.24 | | |||
| Acsm3 | RHP | Retrohippocampal region | 30.47 | |
| 35.88 | | |||
| Acsm3 | sAMY | Striatum-like amygdalar nuclei | 20.26 | |
| 19.69 | | |||
| Acsm3 | STR | Striatum | 14.1 | |
| 13.18 | | |||
| Acsm3 | STRd | Striatum dorsal region | 7.85 | |
| 7.58 | | |||
| Acsm3 | STRv | Striatum ventral region | 30.66 | |
| 23.72 | | |||
| Acsm3 | TH | Thalamus | 14.76 | |
| 15.8 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00072008 | 12 | 77 | 88 | KPSNPAFWWINR | Peptide Atlas |