Annotation Detail for SLC22A23
Basic Information Top
| Gene Symbol: | SLC22A23 ( C6orf85,DKFZp434F011,FLJ22174 ) |
|---|---|
| Gene Full Name: | solute carrier family 22, member 23 |
| Band: | 6p25.2 |
| Quick Links | Entrez ID:63027; OMIM: 611697; Uniprot ID:S22AN_HUMAN; ENSEMBL ID: ENSG00000137266; HGNC ID: 21106 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.713588
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 52 / 564012 | 92 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 89 / 1939121 | 45 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 20 / 263845 | 75 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 165 / 3360307 | 49 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 2 / 123478 | 16 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 62 / 1100989 | 56 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 5 / 211054 | 23 | |
| heart | 4 / 89626 | 44 | |
| intestine | 19 / 234472 | 81 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 21 / 336974 | 62 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 3 / 96619 | 31 | |
| testis | 9 / 330442 | 27 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P7882
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.14 ± 0.23 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.43 ± 0.26 | |
| Basal Part of Pons | 9.54 ± 0.25 | |
| Cerebellar Cortex | 9.03 ± 0.15 | |
| Cerebellar Nuclei | 10.25 ± 0.33 | |
| Claustrum | 8.96 ± 0.3 | |
| Epithalamus | 8.8 ± 0.62 | |
| Frontal Lobe | 9.38 ± 0.38 | |
| Globus Pallidus | 10.05 ± 0.24 | |
| Hypothalamus | 9.01 ± 0.35 | |
| Insula | 9.26 ± 0.23 | |
| Limbic Lobe | 9.17 ± 0.24 | |
| Mesencephalon | 9.54 ± 0.49 | |
| Myelencephalon | 9.45 ± 0.47 | |
| Occipital Lobe | 9.66 ± 0.36 | |
| Parietal Lobe | 9.48 ± 0.33 | |
| Pontine Tegmentum | 9.49 ± 0.42 | |
| Striatum | 10.14 ± 0.3 | |
| Subthalamus | 9.81 ± 0.45 | |
| Temporal Lobe | 9.32 ± 0.29 | |
| Thalamus | 9.76 ± 0.29 | |
| White Matter | 11.08 ± 0.19 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 3110004L20Rik | CB | Cerebellum | 13.75 | |
| 17.08 | | |||
| 3110004L20Rik | CTX | Cerebral cortex | 13.7 | |
| 11.18 | | |||
| 3110004L20Rik | HIP | Hippocampal region | 8.38 | |
| 10.13 | | |||
| 3110004L20Rik | HPF | Hippocampal formation | 9.9 | |
| 10.77 | | |||
| 3110004L20Rik | HY | Hypothalamus | 4.94 | |
| 4.53 | | |||
| 3110004L20Rik | LSX | Lateral septal complex | 6.93 | |
| 6.65 | | |||
| 3110004L20Rik | MB | Midbrain | 11.3 | |
| 13.25 | | |||
| 3110004L20Rik | MY | Medulla | 16.52 | |
| 23.87 | | |||
| 3110004L20Rik | OLF | Olfactory bulb | 14.95 | |
| 14.74 | | |||
| 3110004L20Rik | P | Pons | 17.35 | |
| 22.55 | | |||
| 3110004L20Rik | PAL | Pallidum | 16.51 | |
| 19.57 | | |||
| 3110004L20Rik | RHP | Retrohippocampal region | 11.45 | |
| 10.86 | | |||
| 3110004L20Rik | sAMY | Striatum-like amygdalar nuclei | 5.6 | |
| 5.28 | | |||
| 3110004L20Rik | STR | Striatum | 10.62 | |
| 8.29 | | |||
| 3110004L20Rik | STRd | Striatum dorsal region | 12.36 | |
| 9.59 | | |||
| 3110004L20Rik | STRv | Striatum ventral region | 9.37 | |
| 6.58 | | |||
| 3110004L20Rik | TH | Thalamus | 8.66 | |
| 8.84 | |