Annotation Detail for SBF1
Basic Information Top
| Gene Symbol: | SBF1 ( DKFZp761D0422,MGC99700,MTMR5 ) |
|---|---|
| Gene Full Name: | SET binding factor 1 |
| Band: | 22q13.33 |
| Quick Links | Entrez ID:6305; OMIM: 603560; Uniprot ID:MTMR5_HUMAN; ENSEMBL ID: ENSG00000100241; HGNC ID: 10542 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.589924
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 6 / 62319 | 96 | |
| fetus | 45 / 564012 | 79 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 9 / 55556 | 161 | |
| adult | 161 / 1939121 | 83 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 14 / 119369 | 117 | |
| germ cell tumor | 15 / 263845 | 56 | |
| glioma | 21 / 106883 | 196 | |
| head and neck tumor | 11 / 136302 | 80 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 19 / 95842 | 198 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 15 / 103127 | 145 | |
| lymphoma | 28 / 71755 | 390 |  |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 326 / 3360307 | 97 | |
| ovarian tumor | 11 / 76682 | 143 | |
| pancreatic tumor | 13 / 104616 | 124 | |
| primitive neuroectodermal tumor of the CNS | 14 / 125680 | 111 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 6 / 46356 | 129 | |
| skin tumor | 10 / 124949 | 80 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 18 / 123478 | 145 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 84 / 1100989 | 76 | |
| cervix | 12 / 48171 | 249 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 18 / 215722 | 83 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 16 / 211054 | 75 | |
| heart | 5 / 89626 | 55 | |
| intestine | 32 / 234472 | 136 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 2 / 24145 | 82 | |
| liver | 5 / 207743 | 24 | |
| lung | 34 / 336974 | 100 | |
| lymph | 16 / 44270 | 361 | |
| lymph node | 111 / 91610 | 1211 |  |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 8 / 107715 | 74 | |
| nerve | 4 / 15768 | 253 | |
| ovary | 16 / 102051 | 156 | |
| pancreas | 32 / 214812 | 148 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 19 / 280825 | 67 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 3 / 20155 | 148 | |
| skin | 15 / 210574 | 71 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 10 / 96619 | 103 | |
| testis | 20 / 330442 | 60 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 3 / 16999 | 176 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 39835_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 110.25 | |
| Adipocyte | 53.9 | |
| AdrenalCortex | 46.7 | |
| Adrenalgland | 36.7 | |
| Amygdala | 151.5 | |
| Appendix | 20.45 | |
| AtrioventricularNode | 18.65 | |
| BDCA4+_DentriticCells | 268.05 | |
| Bonemarrow | 19.9 | |
| BronchialEpithelialCells | 62 | |
| CD105+_Endothelial | 47.25 | |
| CD14+_Monocytes | 41.2 | |
| CD19+_BCells(neg._sel.) | 80.4 | |
| CD33+_Myeloid | 62.35 | |
| CD34+ | 104.1 | |
| CD4+_Tcells | 166.6 | |
| CD56+_NKCells | 304.1 | |
| CD71+_EarlyErythroid | 22.95 | |
| CD8+_Tcells | 208.05 | |
| CardiacMyocytes | 56 | |
| Caudatenucleus | 67.5 | |
| Cerebellum | 70.35 | |
| CerebellumPeduncles | 80.8 | |
| CiliaryGanglion | 17.15 | |
| CingulateCortex | 54.9 | |
| Colorectaladenocarcinoma | 69 | |
| DorsalRootGanglion | 17.5 | |
| FetalThyroid | 84.25 | |
| Fetalbrain | 87.55 | |
| Fetalliver | 41.85 | |
| Fetallung | 38.5 | |
| GlobusPallidus | 55.25 | |
| Heart | 67.75 | |
| Hypothalamus | 55.45 | |
| Kidney | 37.8 | |
| Leukemia_chronicMyelogenousK-562 | 46.05 | |
| Leukemia_promyelocytic-HL-60 | 56.45 | |
| Leukemialymphoblastic(MOLT-4) | 77.65 | |
| Liver | 66.35 | |
| Lung | 63.3 | |
| Lymphnode | 77.5 | |
| Lymphoma_burkitts(Daudi) | 71.7 | |
| Lymphoma_burkitts(Raji) | 146.5 | |
| MedullaOblongata | 61.65 | |
| OccipitalLobe | 70.25 | |
| OlfactoryBulb | 37.7 | |
| Ovary | 28.5 | |
| Pancreas | 36 | |
| PancreaticIslet | 31.35 | |
| ParietalLobe | 106.75 | |
| Pituitary | 53.05 | |
| Placenta | 59.1 | |
| Pons | 47.45 | |
| PrefrontalCortex | 150.85 | |
| Prostate | 60.7 | |
| Salivarygland | 16.75 | |
| SkeletalMuscle | 54.4 | |
| Skin | 19.6 | |
| SmoothMuscle | 61.7 | |
| Spinalcord | 103.3 | |
| SubthalamicNucleus | 68.1 | |
| SuperiorCervicalGanglion | 17.75 | |
| TemporalLobe | 51.05 | |
| Testis | 195.05 | |
| TestisGermCell | 373.4 | |
| TestisIntersitial | 89.3 | |
| TestisLeydigCell | 73.6 | |
| TestisSeminiferousTubule | 97.45 | |
| Thalamus | 55.8 | |
| Thymus | 91.85 | |
| Thyroid | 189.1 | |
| Tongue | 47.05 | |
| Tonsil | 52.7 | |
| Trachea | 27.6 | |
| TrigeminalGanglion | 26.15 | |
| Uterus | 31.45 | |
| UterusCorpus | 36.15 | |
| WholeBlood | 56.25 | |
| Wholebrain | 92.95 | |
| colon | 16.65 | |
| pineal_day | 46.72 | |
| pineal_night | 46.42 | |
| retina | 43.875 | |
| small_intestine | 14.55 | |
- Probe name: A_24_P919727
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.28 ± 0.54 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.67 ± 0.39 | |
| Basal Part of Pons | 4.35 ± 0.32 | |
| Cerebellar Cortex | 4.41 ± 0.46 | |
| Cerebellar Nuclei | 4.55 ± 0.44 | |
| Claustrum | 4.83 ± 0.67 | |
| Epithalamus | 4.83 ± 0.63 | |
| Frontal Lobe | 4.36 ± 0.68 | |
| Globus Pallidus | 5.14 ± 0.43 | |
| Hypothalamus | 4.33 ± 0.8 | |
| Insula | 4.28 ± 0.57 | |
| Limbic Lobe | 4.51 ± 0.63 | |
| Mesencephalon | 4.64 ± 0.52 | |
| Myelencephalon | 4.6 ± 0.58 | |
| Occipital Lobe | 4.64 ± 0.6 | |
| Parietal Lobe | 4.46 ± 0.58 | |
| Pontine Tegmentum | 4.31 ± 0.62 | |
| Striatum | 4.62 ± 0.59 | |
| Subthalamus | 4.25 ± 0.67 | |
| Temporal Lobe | 4.39 ± 0.59 | |
| Thalamus | 4.47 ± 0.5 | |
| White Matter | 4.5 ± 0.54 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sbf1 | CB | Cerebellum | 45.15 | |
| 58.32 | | |||
| Sbf1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Sbf1 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Sbf1 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Sbf1 | HY | Hypothalamus | 93.22 | |
| 92.72 | | |||
| Sbf1 | LSX | Lateral septal complex | 75.09 | |
| 69.97 | | |||
| Sbf1 | MB | Midbrain | 92.86 | |
| 95.22 | | |||
| Sbf1 | MY | Medulla | 83.38 | |
| 88.15 | | |||
| Sbf1 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Sbf1 | P | Pons | 76.72 | |
| 77.74 | | |||
| Sbf1 | PAL | Pallidum | 92.39 | |
| 90.82 | | |||
| Sbf1 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Sbf1 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Sbf1 | STR | Striatum | 89.53 | |
| 84.52 | | |||
| Sbf1 | STRd | Striatum dorsal region | 86.28 | |
| 80.04 | | |||
| Sbf1 | STRv | Striatum ventral region | 94 | |
| 86.38 | | |||
| Sbf1 | TH | Thalamus | 99.44 | |
| 97.37 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00042224 | 15 | 599 | 613 | RCLAQELHLHVQQNR | Peptide Atlas |