Annotation Detail for SCNN1D


Gene Symbol: | SCNN1D ( ENaCd,ENaCdelta,MGC149710,MGC149711,SCNED,dNaCh ) |
---|---|
Gene Full Name: | sodium channel, nonvoltage-gated 1, delta |
Band: | 1p36.33 |
Quick Links | Entrez ID:6339; OMIM: 601328; Uniprot ID:SCNND_HUMAN; ENSEMBL ID: ENSG00000162572; HGNC ID: 10601 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.512681
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
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embryoid body | 0 / 70761 | 0 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 6 / 564012 | 10 | ![]() |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 0 / 55556 | 0 | |
adult | 18 / 1939121 | 9 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
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adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 2 / 94178 | 21 | ![]() |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 1 / 82823 | 12 | ![]() |
colorectal tumor | 0 / 114246 | 0 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 1 / 119369 | 8 | ![]() |
germ cell tumor | 2 / 263845 | 7 | ![]() |
glioma | 2 / 106883 | 18 | ![]() |
head and neck tumor | 0 / 136302 | 0 | |
kidney tumor | 0 / 68959 | 0 | |
leukemia | 2 / 95842 | 20 | ![]() |
liver tumor | 0 / 96359 | 0 | |
lung tumor | 2 / 103127 | 19 | ![]() |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 0 / 97250 | 0 | |
normal | 51 / 3360307 | 15 | ![]() |
ovarian tumor | 1 / 76682 | 13 | ![]() |
pancreatic tumor | 0 / 104616 | 0 | |
primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
prostate cancer | 0 / 102680 | 0 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 2 / 124949 | 16 | ![]() |
soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
uterine tumor | 0 / 90257 | 0 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
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adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 0 / 123478 | 0 | |
bone | 1 / 71655 | 13 | ![]() |
bone marrow | 0 / 48801 | 0 | |
brain | 20 / 1100989 | 18 | ![]() |
cervix | 0 / 48171 | 0 | |
connective tissue | 0 / 149255 | 0 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 1 / 215722 | 4 | ![]() |
esophagus | 0 / 20209 | 0 | |
eye | 1 / 211054 | 4 | ![]() |
heart | 1 / 89626 | 11 | ![]() |
intestine | 0 / 234472 | 0 | |
kidney | 1 / 211777 | 4 | ![]() |
larynx | 0 / 24145 | 0 | |
liver | 0 / 207743 | 0 | |
lung | 4 / 336974 | 11 | ![]() |
lymph | 0 / 44270 | 0 | |
lymph node | 0 / 91610 | 0 | |
mammary gland | 2 / 153271 | 13 | ![]() |
mouth | 0 / 67052 | 0 | |
muscle | 0 / 107715 | 0 | |
nerve | 0 / 15768 | 0 | |
ovary | 2 / 102051 | 19 | ![]() |
pancreas | 7 / 214812 | 32 | ![]() |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 2 / 280825 | 7 | ![]() |
prostate | 0 / 189345 | 0 | |
salivary gland | 0 / 20155 | 0 | |
skin | 2 / 210574 | 9 | ![]() |
spleen | 1 / 53952 | 18 | ![]() |
stomach | 1 / 96619 | 10 | ![]() |
testis | 14 / 330442 | 42 | ![]() |
thymus | 1 / 81131 | 12 | ![]() |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 0 / 232878 | 0 | |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 208458_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 4.35 | ![]() |
Adipocyte | 3.4 | ![]() |
AdrenalCortex | 3.5 | ![]() |
Adrenalgland | 2.85 | ![]() |
Amygdala | 3.65 | ![]() |
Appendix | 3.45 | ![]() |
AtrioventricularNode | 2.6 | ![]() |
BDCA4+_DentriticCells | 3.8 | ![]() |
Bonemarrow | 3.4 | ![]() |
BronchialEpithelialCells | 3.4 | ![]() |
CD105+_Endothelial | 3.4 | ![]() |
CD14+_Monocytes | 3.7 | ![]() |
CD19+_BCells(neg._sel.) | 3.7 | ![]() |
CD33+_Myeloid | 4.4 | ![]() |
CD34+ | 4.35 | ![]() |
CD4+_Tcells | 3.8 | ![]() |
CD56+_NKCells | 4.15 | ![]() |
CD71+_EarlyErythroid | 3.25 | ![]() |
CD8+_Tcells | 3.4 | ![]() |
CardiacMyocytes | 4.25 | ![]() |
Caudatenucleus | 3.05 | ![]() |
Cerebellum | 2.8 | ![]() |
CerebellumPeduncles | 3.85 | ![]() |
CiliaryGanglion | 2.4 | ![]() |
CingulateCortex | 3.55 | ![]() |
Colorectaladenocarcinoma | 3.4 | ![]() |
DorsalRootGanglion | 2.6 | ![]() |
FetalThyroid | 3.35 | ![]() |
Fetalbrain | 3.45 | ![]() |
Fetalliver | 2.95 | ![]() |
Fetallung | 2.85 | ![]() |
GlobusPallidus | 2.5 | ![]() |
Heart | 4.35 | ![]() |
Hypothalamus | 3.8 | ![]() |
Kidney | 2.75 | ![]() |
Leukemia_chronicMyelogenousK-562 | 3.1 | ![]() |
Leukemia_promyelocytic-HL-60 | 3 | ![]() |
Leukemialymphoblastic(MOLT-4) | 2.8 | ![]() |
Liver | 4.5 | ![]() |
Lung | 3.8 | ![]() |
Lymphnode | 2.95 | ![]() |
Lymphoma_burkitts(Daudi) | 4.35 | ![]() |
Lymphoma_burkitts(Raji) | 4.8 | ![]() |
MedullaOblongata | 3.15 | ![]() |
OccipitalLobe | 3.1 | ![]() |
OlfactoryBulb | 2.7 | ![]() |
Ovary | 2.25 | ![]() |
Pancreas | 2.75 | ![]() |
PancreaticIslet | 3.7 | ![]() |
ParietalLobe | 3.65 | ![]() |
Pituitary | 4 | ![]() |
Placenta | 3.55 | ![]() |
Pons | 3.25 | ![]() |
PrefrontalCortex | 4.35 | ![]() |
Prostate | 4.1 | ![]() |
Salivarygland | 2.7 | ![]() |
SkeletalMuscle | 4.15 | ![]() |
Skin | 2.55 | ![]() |
SmoothMuscle | 3.9 | ![]() |
Spinalcord | 3.65 | ![]() |
SubthalamicNucleus | 3.05 | ![]() |
SuperiorCervicalGanglion | 3.85 | ![]() |
TemporalLobe | 3.1 | ![]() |
Testis | 3 | ![]() |
TestisGermCell | 2.9 | ![]() |
TestisIntersitial | 2.85 | ![]() |
TestisLeydigCell | 3.35 | ![]() |
TestisSeminiferousTubule | 2.95 | ![]() |
Thalamus | 3.45 | ![]() |
Thymus | 2.75 | ![]() |
Thyroid | 4.3 | ![]() |
Tongue | 3.3 | ![]() |
Tonsil | 3.35 | ![]() |
Trachea | 2.9 | ![]() |
TrigeminalGanglion | 3.35 | ![]() |
Uterus | 2.8 | ![]() |
UterusCorpus | 3.05 | ![]() |
WholeBlood | 3.8 | ![]() |
Wholebrain | 2.95 | ![]() |
colon | 3.45 | ![]() |
pineal_day | 4.32 | ![]() |
pineal_night | 4.22 | ![]() |
retina | 4.175 | ![]() |
small_intestine | 3.35 | ![]() |
- Probe name: CUST_13070_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 2.19 ± 1.05 | ![]() ![]() ![]() |
Basal Forebrain | 1.81 ± 0.27 | ![]() ![]() ![]() |
Basal Part of Pons | 1.41 ± 0.36 | ![]() ![]() ![]() |
Cerebellar Cortex | 1.66 ± 0.75 | ![]() ![]() ![]() |
Cerebellar Nuclei | 2.03 ± 0.7 | ![]() ![]() ![]() |
Claustrum | 2.67 ± 0.92 | ![]() ![]() ![]() |
Epithalamus | 1.44 ± 0.62 | ![]() ![]() ![]() |
Frontal Lobe | 1.55 ± 0.6 | ![]() ![]() ![]() |
Globus Pallidus | 2.26 ± 0.48 | ![]() ![]() ![]() |
Hypothalamus | 2.14 ± 1.37 | ![]() ![]() ![]() |
Insula | 1.64 ± 0.51 | ![]() ![]() ![]() |
Limbic Lobe | 1.75 ± 0.64 | ![]() ![]() ![]() |
Mesencephalon | 1.87 ± 0.64 | ![]() ![]() ![]() |
Myelencephalon | 1.76 ± 0.66 | ![]() ![]() ![]() |
Occipital Lobe | 1.82 ± 0.82 | ![]() ![]() ![]() |
Parietal Lobe | 1.81 ± 0.73 | ![]() ![]() ![]() |
Pontine Tegmentum | 1.79 ± 0.71 | ![]() ![]() ![]() |
Striatum | 1.82 ± 0.57 | ![]() ![]() ![]() |
Subthalamus | 1.83 ± 0.55 | ![]() ![]() ![]() |
Temporal Lobe | 1.62 ± 0.6 | ![]() ![]() ![]() |
Thalamus | 1.68 ± 0.56 | ![]() ![]() ![]() |
White Matter | 2.2 ± 0.4 | ![]() ![]() ![]() |