Annotation Detail for SCNN1G
Basic Information Top
| Gene Symbol: | SCNN1G ( BESC3,ENaCg,ENaCgamma,PHA1,SCNEG ) |
|---|---|
| Gene Full Name: | sodium channel, nonvoltage-gated 1, gamma |
| Band: | 16p12.2 |
| Quick Links | Entrez ID:6340; OMIM: 600761; Uniprot ID:SCNNG_HUMAN; ENSEMBL ID: ENSG00000166828; HGNC ID: 10602 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.371727
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 3 / 1939121 | 1 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 12 / 3360307 | 3 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 3 / 1100989 | 2 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 |  |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_560_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.17 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.7 ± 0.21 | |
| Basal Part of Pons | 1.38 ± 0.31 | |
| Cerebellar Cortex | 2.07 ± 0.74 | |
| Cerebellar Nuclei | 2.28 ± 0.94 | |
| Claustrum | 2.64 ± 0.87 | |
| Epithalamus | 1.45 ± 0.7 | |
| Frontal Lobe | 1.6 ± 0.74 | |
| Globus Pallidus | 2.12 ± 0.54 | |
| Hypothalamus | 1.75 ± 0.67 | |
| Insula | 1.64 ± 0.53 | |
| Limbic Lobe | 1.76 ± 0.6 | |
| Mesencephalon | 1.84 ± 0.62 | |
| Myelencephalon | 1.75 ± 0.64 | |
| Occipital Lobe | 1.73 ± 0.5 | |
| Parietal Lobe | 1.66 ± 0.56 | |
| Pontine Tegmentum | 1.85 ± 0.78 | |
| Striatum | 1.76 ± 0.66 | |
| Subthalamus | 1.89 ± 0.62 | |
| Temporal Lobe | 1.6 ± 0.56 | |
| Thalamus | 1.69 ± 0.56 | |
| White Matter | 2.25 ± 0.47 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Scnn1g | CB | Cerebellum | 61.15 | |
| 53.27 | | |||
| Scnn1g | CTX | Cerebral cortex | 100 | |
| 79.8 | | |||
| Scnn1g | HIP | Hippocampal region | 75.1 | |
| 57.59 | | |||
| Scnn1g | HPF | Hippocampal formation | 89.59 | |
| 77.41 | | |||
| Scnn1g | HY | Hypothalamus | 60.13 | |
| 43.93 | | |||
| Scnn1g | LSX | Lateral septal complex | 50.21 | |
| 32.54 | | |||
| Scnn1g | MB | Midbrain | 53.47 | |
| 44.16 | | |||
| Scnn1g | MY | Medulla | 50.86 | |
| 50.4 | | |||
| Scnn1g | OLF | Olfactory bulb | 100 | |
| 99.47 | | |||
| Scnn1g | P | Pons | 64.62 | |
| 52.92 | | |||
| Scnn1g | PAL | Pallidum | 59.47 | |
| 49.03 | | |||
| Scnn1g | RHP | Retrohippocampal region | 100 | |
| 98.65 | | |||
| Scnn1g | sAMY | Striatum-like amygdalar nuclei | 72.16 | |
| 46.03 | | |||
| Scnn1g | STR | Striatum | 55.21 | |
| 36.18 | | |||
| Scnn1g | STRd | Striatum dorsal region | 38.44 | |
| 24.33 | | |||
| Scnn1g | STRv | Striatum ventral region | 100 | |
| 67.18 | | |||
| Scnn1g | TH | Thalamus | 48.31 | |
| 34.97 | |