AutismKB 2.0

Annotation Detail for CCL5


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Basic Information Top
Gene Symbol:CCL5 ( D17S136E,MGC17164,RANTES,SCYA5,SISd,TCP228 )
Gene Full Name: chemokine (C-C motif) ligand 5
Band: 17q12
Quick LinksEntrez ID:6352; OMIM: 187011; Uniprot ID:CCL5_HUMAN; ENSEMBL ID: ENSG00000161570; HGNC ID: 10632
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant2 / 2362084
juvenile1 / 5555617
adult36 / 193912118
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia7 / 9584273
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal54 / 336030716
ovarian tumor2 / 7668226
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood21 / 123478170
bone2 / 7165527
bone marrow0 / 488010 
brain1 / 11009890 
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine4 / 23447217
kidney2 / 2117779
larynx0 / 241450 
liver4 / 20774319
lung10 / 33697429
lymph0 / 442700 
lymph node2 / 9161021
mammary gland2 / 15327113
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary2 / 10205119
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx12 / 41328290
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate6 / 18934531
salivary gland0 / 201550 
skin2 / 2105749
spleen1 / 5395218
stomach6 / 9661962
testis1 / 3304423
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204655_at
Cell line Expression level Expression bar
721_B_lymphoblasts96
Adipocyte7.1
AdrenalCortex8.1
Adrenalgland6.25
Amygdala7.45
Appendix8.1
AtrioventricularNode8.1
BDCA4+_DentriticCells58.45
Bonemarrow105.15
BronchialEpithelialCells6.85
CD105+_Endothelial7.9
CD14+_Monocytes112.25
CD19+_BCells(neg._sel.)72.75
CD33+_Myeloid8.7
CD34+9.7
CD4+_Tcells1798.6
CD56+_NKCells5919.3
CD71+_EarlyErythroid6.35
CD8+_Tcells3679.35
CardiacMyocytes9.25
Caudatenucleus6.35
Cerebellum5.6
CerebellumPeduncles8.3
CiliaryGanglion6.85
CingulateCortex7.05
Colorectaladenocarcinoma8.05
DorsalRootGanglion6.95
FetalThyroid7.5
Fetalbrain6.9
Fetalliver6.35
Fetallung7.15
GlobusPallidus6.1
Heart126.15
Hypothalamus8.1
Kidney5.45
Leukemia_chronicMyelogenousK-5626.3
Leukemia_promyelocytic-HL-605.65
Leukemialymphoblastic(MOLT-4)5.55
Liver10.65
Lung303.7
Lymphnode297.95
Lymphoma_burkitts(Daudi)8.9
Lymphoma_burkitts(Raji)68.2
MedullaOblongata6.4
OccipitalLobe6.2
OlfactoryBulb7.95
Ovary4.95
Pancreas13.7
PancreaticIslet50.55
ParietalLobe7.1
Pituitary8.6
Placenta14.25
Pons6.85
PrefrontalCortex8.4
Prostate52.8
Salivarygland54.55
SkeletalMuscle8.25
Skin6.7
SmoothMuscle7.55
Spinalcord8.65
SubthalamicNucleus6.35
SuperiorCervicalGanglion11.15
TemporalLobe6.5
Testis6.2
TestisGermCell7.2
TestisIntersitial5.8
TestisLeydigCell9.3
TestisSeminiferousTubule6.1
Thalamus7.25
Thymus68.45
Thyroid34
Tongue11.65
Tonsil47.75
Trachea56.05
TrigeminalGanglion8.25
Uterus10.05
UterusCorpus7.55
WholeBlood2243.65
Wholebrain5.15
colon25.6
pineal_day8.34
pineal_night8.42
retina16.85
small_intestine70.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P152838
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.18 ± 0.97
Basal Forebrain1.85 ± 0.43
Basal Part of Pons2.01 ± 0.78
Cerebellar Cortex1.57 ± 0.67
Cerebellar Nuclei2.19 ± 0.88
Claustrum2.45 ± 0.68
Epithalamus3.28 ± 0.7
Frontal Lobe1.73 ± 0.8
Globus Pallidus3.84 ± 0.39
Hypothalamus2.12 ± 1.3
Insula1.44 ± 0.44
Limbic Lobe1.8 ± 0.84
Mesencephalon1.9 ± 0.77
Myelencephalon2.05 ± 0.7
Occipital Lobe1.72 ± 0.88
Parietal Lobe1.83 ± 0.86
Pontine Tegmentum1.93 ± 0.89
Striatum2.21 ± 0.7
Subthalamus1.89 ± 0.64
Temporal Lobe1.85 ± 0.87
Thalamus1.8 ± 0.58
White Matter2.85 ± 1.07
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ccl5CBCerebellum1.9
1.81
Ccl5CTXCerebral cortex1.54
0.88
Ccl5HIPHippocampal region1.08
0.64
Ccl5HPFHippocampal formation1.37
0.77
Ccl5HYHypothalamus0.36
0.23
Ccl5LSXLateral septal complex2.34
1.95
Ccl5MBMidbrain0.46
0.4
Ccl5MYMedulla3.37
1.76
Ccl5OLFOlfactory bulb3.29
2.91
Ccl5PPons0.49
0.28
Ccl5PALPallidum0.21
0.22
Ccl5RHPRetrohippocampal region1.8
0.93
Ccl5sAMYStriatum-like amygdalar nuclei0.32
0.17
Ccl5STRStriatum0.65
0.44
Ccl5STRdStriatum dorsal region0.24
0.14
Ccl5STRvStriatum ventral region1.42
0.84
Ccl5THThalamus0.39
0.31
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009684 11 57 67 CSNPAVVFVTR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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