AutismKB 2.0

Annotation Detail for CCL17


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Basic Information Top
Gene Symbol:CCL17 ( A-152E5.3,ABCD-2,MGC138271,MGC138273,SCYA17,TARC )
Gene Full Name: chemokine (C-C motif) ligand 17
Band: 16q21
Quick LinksEntrez ID:6361; OMIM: 601520; Uniprot ID:CCL17_HUMAN; ENSEMBL ID: ENSG00000102970; HGNC ID: 10615
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult1 / 19391210 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal0 / 33603070 
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207900_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.3
Adipocyte7.75
AdrenalCortex9.55
Adrenalgland6.9
Amygdala7.85
Appendix8.3
AtrioventricularNode7.4
BDCA4+_DentriticCells7.5
Bonemarrow8.95
BronchialEpithelialCells7.55
CD105+_Endothelial7.9
CD14+_Monocytes8.35
CD19+_BCells(neg._sel.)8.2
CD33+_Myeloid9.4
CD34+9.55
CD4+_Tcells8.05
CD56+_NKCells8.9
CD71+_EarlyErythroid7.45
CD8+_Tcells6.95
CardiacMyocytes15.2
Caudatenucleus7.1
Cerebellum6.45
CerebellumPeduncles9.15
CiliaryGanglion6.45
CingulateCortex8.8
Colorectaladenocarcinoma7.85
DorsalRootGanglion6.35
FetalThyroid7.8
Fetalbrain7.55
Fetalliver6.95
Fetallung6.35
GlobusPallidus6.35
Heart11.95
Hypothalamus7.85
Kidney6.75
Leukemia_chronicMyelogenousK-5627.05
Leukemia_promyelocytic-HL-606.95
Leukemialymphoblastic(MOLT-4)5.85
Liver10.75
Lung8.5
Lymphnode6.6
Lymphoma_burkitts(Daudi)10.15
Lymphoma_burkitts(Raji)11.4
MedullaOblongata7.15
OccipitalLobe7.05
OlfactoryBulb6.1
Ovary5.3
Pancreas6.4
PancreaticIslet8.45
ParietalLobe8.45
Pituitary9.2
Placenta7.65
Pons7.75
PrefrontalCortex9.35
Prostate8.8
Salivarygland6.75
SkeletalMuscle12.65
Skin7.65
SmoothMuscle8.75
Spinalcord8.4
SubthalamicNucleus7.45
SuperiorCervicalGanglion11.9
TemporalLobe7.4
Testis6.7
TestisGermCell6.2
TestisIntersitial6.55
TestisLeydigCell7.85
TestisSeminiferousTubule6.7
Thalamus8.2
Thymus6.05
Thyroid9.05
Tongue8.6
Tonsil7.65
Trachea6.55
TrigeminalGanglion8.3
Uterus6.15
UterusCorpus7.55
WholeBlood8.45
Wholebrain6.05
colon7.7
pineal_day9.54
pineal_night9.38
retina9.45
small_intestine7.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14450_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.89 ± 1.06
Basal Forebrain1.48 ± 0.16
Basal Part of Pons1.08 ± 0.37
Cerebellar Cortex1.29 ± 0.73
Cerebellar Nuclei1.67 ± 0.69
Claustrum2.23 ± 0.82
Epithalamus1.23 ± 0.85
Frontal Lobe1.25 ± 0.58
Globus Pallidus2 ± 0.6
Hypothalamus1.47 ± 0.69
Insula1.26 ± 0.52
Limbic Lobe1.43 ± 0.66
Mesencephalon1.57 ± 0.72
Myelencephalon1.45 ± 0.67
Occipital Lobe1.54 ± 0.68
Parietal Lobe1.44 ± 0.84
Pontine Tegmentum1.5 ± 0.7
Striatum1.53 ± 0.6
Subthalamus1.65 ± 0.48
Temporal Lobe1.33 ± 0.66
Thalamus1.36 ± 0.6
White Matter1.8 ± 0.19
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CCL17_HUMAN_0 0 0 0 TWYQTSEDCSR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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