AutismKB 2.0

Annotation Detail for BCAN


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Basic Information Top
Gene Symbol:BCAN ( BEHAB,CSPG7,MGC13038 )
Gene Full Name: brevican
Band: 1q23.1
Quick LinksEntrez ID:63827; OMIM: 600347; Uniprot ID:PGCB_HUMAN; ENSEMBL ID: ENSG00000132692; HGNC ID: 23059
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus27 / 56401247
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult85 / 193912143
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult16 / 19391218
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma334 / 1068833124
head and neck tumor0 / 1363020 
kidney tumor3 / 6895943
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor4 / 10312738
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal119 / 336030735
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor1 / 3436629
chondrosarcoma0 / 828230 
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor2 / 2638457
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor4 / 9635941
lung tumor9 / 10312787
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal7 / 33603072
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor13 / 124949104
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain461 / 1100989418
cervix1 / 4817120
connective tissue0 / 1492550 
ear3 / 16212185
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye9 / 21105442
heart0 / 896260 
intestine7 / 23447229
kidney4 / 21177718
larynx0 / 241450 
liver0 / 2077430 
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate1 / 1893455
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach1 / 9661910
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain1 / 11009890 
cervix5 / 48171103
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine17 / 23447272
kidney0 / 2117770 
larynx0 / 241450 
liver5 / 20774324
lung10 / 33697429
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin13 / 21057461
spleen0 / 539520 
stomach2 / 9661920
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219107_at
Cell line Expression level Expression bar
721_B_lymphoblasts20.2
Adipocyte36.55
AdrenalCortex44.8
Adrenalgland36.4
Amygdala148.45
Appendix27.9
AtrioventricularNode27.85
BDCA4+_DentriticCells27.55
Bonemarrow68.4
BronchialEpithelialCells31.35
CD105+_Endothelial18.2
CD14+_Monocytes20.95
CD19+_BCells(neg._sel.)26.85
CD33+_Myeloid23.55
CD34+18.95
CD4+_Tcells29.65
CD56+_NKCells20.6
CD71+_EarlyErythroid26.55
CD8+_Tcells12.4
CardiacMyocytes42.5
Caudatenucleus111.7
Cerebellum72
CerebellumPeduncles149.05
CiliaryGanglion26.45
CingulateCortex84.25
Colorectaladenocarcinoma35.35
DorsalRootGanglion36.6
FetalThyroid34.85
Fetalbrain119.1
Fetalliver31.45
Fetallung24.7
GlobusPallidus74.9
Heart65.7
Hypothalamus81.9
Kidney49.25
Leukemia_chronicMyelogenousK-56218.15
Leukemia_promyelocytic-HL-6020.4
Leukemialymphoblastic(MOLT-4)25.95
Liver47.9
Lung42.4
Lymphnode30.6
Lymphoma_burkitts(Daudi)46.2
Lymphoma_burkitts(Raji)50.95
MedullaOblongata49.25
OccipitalLobe115.45
OlfactoryBulb28.7
Ovary33.3
Pancreas29
PancreaticIslet33.1
ParietalLobe96.05
Pituitary50.1
Placenta34.8
Pons60.35
PrefrontalCortex91.65
Prostate34.2
Salivarygland24.45
SkeletalMuscle50.2
Skin27.65
SmoothMuscle34.05
Spinalcord78.4
SubthalamicNucleus51.45
SuperiorCervicalGanglion43.55
TemporalLobe53.8
Testis30.45
TestisGermCell23.15
TestisIntersitial32.8
TestisLeydigCell39.15
TestisSeminiferousTubule30.9
Thalamus48.7
Thymus26
Thyroid43.4
Tongue37.05
Tonsil31.1
Trachea28.7
TrigeminalGanglion75.95
Uterus28.05
UterusCorpus28.55
WholeBlood29.45
Wholebrain114.9
colon35.25
pineal_day33.94
pineal_night34.54
retina87.2
small_intestine34.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P160607
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.89 ± 0.38
Basal Forebrain8.84 ± 0.13
Basal Part of Pons7.98 ± 0.24
Cerebellar Cortex8.05 ± 0.15
Cerebellar Nuclei8.47 ± 0.3
Claustrum8.48 ± 0.33
Epithalamus8.59 ± 0.37
Frontal Lobe8.43 ± 0.42
Globus Pallidus9.08 ± 0.37
Hypothalamus8.42 ± 0.35
Insula8.44 ± 0.43
Limbic Lobe8.47 ± 0.55
Mesencephalon8.61 ± 0.39
Myelencephalon8.5 ± 0.39
Occipital Lobe8.26 ± 0.33
Parietal Lobe8.32 ± 0.46
Pontine Tegmentum8.47 ± 0.38
Striatum9.02 ± 0.28
Subthalamus7.86 ± 0.58
Temporal Lobe8.49 ± 0.41
Thalamus8.58 ± 0.35
White Matter8.8 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BcanCBCerebellum100
100
BcanCTXCerebral cortex61.56
46.07
BcanHIPHippocampal region98.72
88.06
BcanHPFHippocampal formation95.94
78.98
BcanHYHypothalamus80.14
55.76
BcanLSXLateral septal complex100
85.64
BcanMBMidbrain93.43
71.61
BcanMYMedulla100
100
BcanOLFOlfactory bulb94.02
68.74
BcanPPons100
95.54
BcanPALPallidum84.6
67.35
BcanRHPRetrohippocampal region91.42
66.13
BcansAMYStriatum-like amygdalar nuclei71.93
49.8
BcanSTRStriatum64.51
49.42
BcanSTRdStriatum dorsal region54.1
44.48
BcanSTRvStriatum ventral region71.69
49.16
BcanTHThalamus70.51
50.18
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00064423 17 137 153 CEVQHGIDDSSDAVEVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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