Annotation Detail for PKNOX2
Basic Information Top
Gene Symbol: | PKNOX2 ( FLJ13074,PREP2 ) |
---|---|
Gene Full Name: | PBX/knotted 1 homeobox 2 |
Band: | 11q24.2 |
Quick Links | Entrez ID:63876; OMIM: 613066; Uniprot ID:PKNX2_HUMAN; ENSEMBL ID: ENSG00000165495; HGNC ID: 16714 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.278564
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 0 / 70761 | 0 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 9 / 564012 | 15 | |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 0 / 55556 | 0 | |
adult | 4 / 1939121 | 2 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 0 / 94178 | 0 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 0 / 82823 | 0 | |
colorectal tumor | 0 / 114246 | 0 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 0 / 119369 | 0 | |
germ cell tumor | 1 / 263845 | 3 | |
glioma | 0 / 106883 | 0 | |
head and neck tumor | 0 / 136302 | 0 | |
kidney tumor | 0 / 68959 | 0 | |
leukemia | 0 / 95842 | 0 | |
liver tumor | 0 / 96359 | 0 | |
lung tumor | 0 / 103127 | 0 | |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 0 / 97250 | 0 | |
normal | 18 / 3360307 | 5 | |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 0 / 104616 | 0 | |
primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
prostate cancer | 0 / 102680 | 0 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
uterine tumor | 1 / 90257 | 11 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 0 / 123478 | 0 | |
bone | 0 / 71655 | 0 | |
bone marrow | 0 / 48801 | 0 | |
brain | 3 / 1100989 | 2 | |
cervix | 0 / 48171 | 0 | |
connective tissue | 0 / 149255 | 0 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 0 / 215722 | 0 | |
esophagus | 0 / 20209 | 0 | |
eye | 2 / 211054 | 9 | |
heart | 3 / 89626 | 33 | |
intestine | 0 / 234472 | 0 | |
kidney | 0 / 211777 | 0 | |
larynx | 0 / 24145 | 0 | |
liver | 0 / 207743 | 0 | |
lung | 0 / 336974 | 0 | |
lymph | 0 / 44270 | 0 | |
lymph node | 0 / 91610 | 0 | |
mammary gland | 0 / 153271 | 0 | |
mouth | 0 / 67052 | 0 | |
muscle | 0 / 107715 | 0 | |
nerve | 0 / 15768 | 0 | |
ovary | 1 / 102051 | 9 | |
pancreas | 0 / 214812 | 0 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 1 / 280825 | 3 | |
prostate | 0 / 189345 | 0 | |
salivary gland | 0 / 20155 | 0 | |
skin | 1 / 210574 | 4 | |
spleen | 1 / 53952 | 18 | |
stomach | 0 / 96619 | 0 | |
testis | 0 / 330442 | 0 | |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 1 / 232878 | 4 | |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 63305_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 8.45 | |
Adipocyte | 7.9 | |
AdrenalCortex | 8.8 | |
Adrenalgland | 7.1 | |
Amygdala | 13.45 | |
Appendix | 10.6 | |
AtrioventricularNode | 8.4 | |
BDCA4+_DentriticCells | 7.55 | |
Bonemarrow | 8.75 | |
BronchialEpithelialCells | 8.05 | |
CD105+_Endothelial | 7.95 | |
CD14+_Monocytes | 8.4 | |
CD19+_BCells(neg._sel.) | 8 | |
CD33+_Myeloid | 9.4 | |
CD34+ | 9.2 | |
CD4+_Tcells | 7.7 | |
CD56+_NKCells | 8.55 | |
CD71+_EarlyErythroid | 7.7 | |
CD8+_Tcells | 6.75 | |
CardiacMyocytes | 13 | |
Caudatenucleus | 7.45 | |
Cerebellum | 9.15 | |
CerebellumPeduncles | 10.1 | |
CiliaryGanglion | 6.7 | |
CingulateCortex | 14.85 | |
Colorectaladenocarcinoma | 8.15 | |
DorsalRootGanglion | 7.05 | |
FetalThyroid | 8.15 | |
Fetalbrain | 13.95 | |
Fetalliver | 7.3 | |
Fetallung | 6.85 | |
GlobusPallidus | 9.55 | |
Heart | 11.15 | |
Hypothalamus | 8.95 | |
Kidney | 7.05 | |
Leukemia_chronicMyelogenousK-562 | 7.35 | |
Leukemia_promyelocytic-HL-60 | 7.15 | |
Leukemialymphoblastic(MOLT-4) | 6.2 | |
Liver | 11.05 | |
Lung | 11.35 | |
Lymphnode | 7.05 | |
Lymphoma_burkitts(Daudi) | 10.35 | |
Lymphoma_burkitts(Raji) | 11.85 | |
MedullaOblongata | 14.25 | |
OccipitalLobe | 13.5 | |
OlfactoryBulb | 6.5 | |
Ovary | 6.5 | |
Pancreas | 6.8 | |
PancreaticIslet | 8.85 | |
ParietalLobe | 11.25 | |
Pituitary | 9.65 | |
Placenta | 8.6 | |
Pons | 10.15 | |
PrefrontalCortex | 30.1 | |
Prostate | 9.6 | |
Salivarygland | 6.75 | |
SkeletalMuscle | 12 | |
Skin | 6.95 | |
SmoothMuscle | 16.05 | |
Spinalcord | 8.8 | |
SubthalamicNucleus | 9.05 | |
SuperiorCervicalGanglion | 11.6 | |
TemporalLobe | 8.7 | |
Testis | 7.2 | |
TestisGermCell | 6.85 | |
TestisIntersitial | 7.25 | |
TestisLeydigCell | 8.45 | |
TestisSeminiferousTubule | 7.05 | |
Thalamus | 8.5 | |
Thymus | 6.5 | |
Thyroid | 20.25 | |
Tongue | 9 | |
Tonsil | 8.05 | |
Trachea | 6.85 | |
TrigeminalGanglion | 11.55 | |
Uterus | 6.75 | |
UterusCorpus | 8.3 | |
WholeBlood | 8.9 | |
Wholebrain | 24.8 | |
colon | 8.2 | |
pineal_day | 9.62 | |
pineal_night | 9.58 | |
retina | 45.75 | |
small_intestine | 7.9 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: CUST_5322_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 4.36 ± 0.95 | |
Basal Forebrain | 4.03 ± 0.62 | |
Basal Part of Pons | 4.02 ± 0.61 | |
Cerebellar Cortex | 3.67 ± 0.6 | |
Cerebellar Nuclei | 3.55 ± 0.59 | |
Claustrum | 4.45 ± 0.7 | |
Epithalamus | 3.86 ± 0.55 | |
Frontal Lobe | 3.89 ± 0.66 | |
Globus Pallidus | 2.79 ± 0.74 | |
Hypothalamus | 3.64 ± 0.79 | |
Insula | 3.99 ± 0.49 | |
Limbic Lobe | 4.02 ± 0.64 | |
Mesencephalon | 4.07 ± 0.77 | |
Myelencephalon | 4.02 ± 0.82 | |
Occipital Lobe | 4.74 ± 0.74 | |
Parietal Lobe | 4.32 ± 0.67 | |
Pontine Tegmentum | 3.92 ± 0.72 | |
Striatum | 3.4 ± 1.03 | |
Subthalamus | 4.56 ± 0.1 | |
Temporal Lobe | 4.09 ± 0.59 | |
Thalamus | 3.66 ± 0.66 | |
White Matter | 2.48 ± 0.43 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Pknox2 | CB | Cerebellum | 18.09 | |
20.23 | ||||
Pknox2 | CTX | Cerebral cortex | 100 | |
100 | ||||
Pknox2 | HIP | Hippocampal region | 33.71 | |
44.73 | ||||
Pknox2 | HPF | Hippocampal formation | 47.56 | |
51.38 | ||||
Pknox2 | HY | Hypothalamus | 8.48 | |
7.29 | ||||
Pknox2 | LSX | Lateral septal complex | 9.66 | |
7.2 | ||||
Pknox2 | MB | Midbrain | 10.66 | |
9.27 | ||||
Pknox2 | MY | Medulla | 17.64 | |
17.27 | ||||
Pknox2 | OLF | Olfactory bulb | 65.79 | |
70.13 | ||||
Pknox2 | P | Pons | 9.94 | |
9.79 | ||||
Pknox2 | PAL | Pallidum | 19.94 | |
16.86 | ||||
Pknox2 | RHP | Retrohippocampal region | 70.2 | |
60.74 | ||||
Pknox2 | sAMY | Striatum-like amygdalar nuclei | 54.62 | |
43.19 | ||||
Pknox2 | STR | Striatum | 37.88 | |
28.36 | ||||
Pknox2 | STRd | Striatum dorsal region | 33.56 | |
23.72 | ||||
Pknox2 | STRv | Striatum ventral region | 52.56 | |
40.77 | ||||
Pknox2 | TH | Thalamus | 8.48 | |
7.24 |