AutismKB 2.0

Annotation Detail for SDF2


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Basic Information Top
Gene Symbol:SDF2 ( - )
Gene Full Name: stromal cell-derived factor 2
Band: 17q11.2
Quick LinksEntrez ID:6388; OMIM: 602934; Uniprot ID:SDF2_HUMAN; ENSEMBL ID: ENSG00000132581; HGNC ID: 10675
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst3 / 6231948
fetus19 / 56401233
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult98 / 193912150
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor0 / 343660 
chondrosarcoma10 / 82823120
colorectal tumor12 / 114246105
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor4 / 26384515
glioma5 / 10688346
head and neck tumor3 / 13630222
kidney tumor3 / 6895943
leukemia2 / 9584220
liver tumor2 / 9635920
lung tumor9 / 10312787
lymphoma5 / 7175569
non-neoplasia1 / 9725010
normal124 / 336030736
ovarian tumor13 / 76682169
pancreatic tumor14 / 104616133
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer1 / 1026809
retinoblastoma1 / 4635621
skin tumor3 / 12494924
soft tissue/muscle tissue tumor18 / 125191143
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites4 / 4001599
bladder0 / 297570 
blood1 / 1234788
bone5 / 7165569
bone marrow3 / 4880161
brain20 / 110098918
cervix0 / 481710 
connective tissue15 / 149255100
ear2 / 16212123
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye14 / 21105466
heart0 / 896260 
intestine15 / 23447263
kidney5 / 21177723
larynx1 / 2414541
liver4 / 20774319
lung37 / 336974109
lymph4 / 4427090
lymph node4 / 9161043
mammary gland7 / 15327145
mouth0 / 670520 
muscle5 / 10771546
nerve0 / 157680 
ovary15 / 102051146
pancreas19 / 21481288
parathyroid0 / 205390 
pharynx4 / 4132896
pituitary gland1 / 1658560
placenta16 / 28082556
prostate4 / 18934521
salivary gland9 / 20155446
skin5 / 21057423
spleen0 / 539520 
stomach1 / 9661910
testis6 / 33044218
thymus2 / 8113124
thyroid2 / 4747342
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord2 / 13680146
uterus7 / 23287830
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203090_at
Cell line Expression level Expression bar
721_B_lymphoblasts14.8
Adipocyte11.6
AdrenalCortex11.15
Adrenalgland15.8
Amygdala10.85
Appendix11.15
AtrioventricularNode8.95
BDCA4+_DentriticCells17.45
Bonemarrow12.05
BronchialEpithelialCells12.7
CD105+_Endothelial11.85
CD14+_Monocytes19.25
CD19+_BCells(neg._sel.)13.85
CD33+_Myeloid23.6
CD34+30.4
CD4+_Tcells11.95
CD56+_NKCells43.65
CD71+_EarlyErythroid5.6
CD8+_Tcells10.45
CardiacMyocytes12.2
Caudatenucleus10.1
Cerebellum9.15
CerebellumPeduncles11.75
CiliaryGanglion8.1
CingulateCortex11.5
Colorectaladenocarcinoma11.1
DorsalRootGanglion8.8
FetalThyroid9.9
Fetalbrain10.95
Fetalliver9.65
Fetallung11.65
GlobusPallidus8.25
Heart10.55
Hypothalamus11.65
Kidney9.35
Leukemia_chronicMyelogenousK-56210.15
Leukemia_promyelocytic-HL-609.5
Leukemialymphoblastic(MOLT-4)9
Liver14.4
Lung13.65
Lymphnode9.9
Lymphoma_burkitts(Daudi)14.3
Lymphoma_burkitts(Raji)11.75
MedullaOblongata9.65
OccipitalLobe9.5
OlfactoryBulb8.8
Ovary7.45
Pancreas8.35
PancreaticIslet12
ParietalLobe10.55
Pituitary14.4
Placenta16.5
Pons7.5
PrefrontalCortex14.9
Prostate19.4
Salivarygland10.95
SkeletalMuscle12.25
Skin8.8
SmoothMuscle16.7
Spinalcord12.1
SubthalamicNucleus9.55
SuperiorCervicalGanglion12.45
TemporalLobe9.15
Testis10.4
TestisGermCell11.05
TestisIntersitial8.6
TestisLeydigCell10.6
TestisSeminiferousTubule9.55
Thalamus11
Thymus11.9
Thyroid16.1
Tongue10.9
Tonsil9.55
Trachea11.8
TrigeminalGanglion10.9
Uterus9.05
UterusCorpus9.9
WholeBlood42.3
Wholebrain16.4
colon10.45
pineal_day16.56
pineal_night19.68
retina13.75
small_intestine8.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P107313
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.97 ± 0.51
Basal Forebrain5.62 ± 0.2
Basal Part of Pons6.02 ± 0.45
Cerebellar Cortex6.16 ± 0.35
Cerebellar Nuclei5.68 ± 0.53
Claustrum5.83 ± 0.51
Epithalamus5.95 ± 0.22
Frontal Lobe6.04 ± 0.41
Globus Pallidus5.7 ± 0.3
Hypothalamus6.02 ± 0.3
Insula6.09 ± 0.29
Limbic Lobe5.86 ± 0.46
Mesencephalon5.9 ± 0.43
Myelencephalon5.9 ± 0.43
Occipital Lobe5.53 ± 0.4
Parietal Lobe5.87 ± 0.36
Pontine Tegmentum5.9 ± 0.37
Striatum5.43 ± 0.28
Subthalamus5.34 ± 0.57
Temporal Lobe6.02 ± 0.4
Thalamus5.84 ± 0.37
White Matter6.17 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Sdf2CBCerebellum25.14
58
Sdf2CTXCerebral cortex64.15
49.12
Sdf2HIPHippocampal region38.65
41.65
Sdf2HPFHippocampal formation45.45
43.94
Sdf2HYHypothalamus47.96
41.44
Sdf2LSXLateral septal complex26.41
19.93
Sdf2MBMidbrain42.2
39.43
Sdf2MYMedulla57.89
73
Sdf2OLFOlfactory bulb60.78
50.75
Sdf2PPons54.8
62.33
Sdf2PALPallidum50.64
49.04
Sdf2RHPRetrohippocampal region58.09
47.93
Sdf2sAMYStriatum-like amygdalar nuclei71.74
59.6
Sdf2STRStriatum33.81
25.79
Sdf2STRdStriatum dorsal region24.75
18.83
Sdf2STRvStriatum ventral region41.28
27.44
Sdf2THThalamus37.79
30.87
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00011555 13 19 31 SSLGVVTCGSVVK Peptide Atlas
SDF2_HUMAN_190 14 190 203 AMEGIFMKPSELLK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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