Annotation Detail for SH2D4A
Basic Information Top
Gene Symbol: | SH2D4A ( FLJ20967,SH2A ) |
---|---|
Gene Full Name: | SH2 domain containing 4A |
Band: | 8p21.3 |
Quick Links | Entrez ID:63898; OMIM: NA; Uniprot ID:SH24A_HUMAN; ENSEMBL ID: ENSG00000104611; HGNC ID: 26102 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.303208
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 0 / 70761 | 0 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 9 / 564012 | 15 | |
neonate | 1 / 31097 | 32 | |
infant | 0 / 23620 | 0 | |
juvenile | 0 / 55556 | 0 | |
adult | 50 / 1939121 | 25 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 3 / 94178 | 31 | |
cervical tumor | 3 / 34366 | 87 | |
chondrosarcoma | 5 / 82823 | 60 | |
colorectal tumor | 4 / 114246 | 35 | |
esophageal tumor | 1 / 17290 | 57 | |
gastrointestinal tumor | 8 / 119369 | 67 | |
germ cell tumor | 2 / 263845 | 7 | |
glioma | 0 / 106883 | 0 | |
head and neck tumor | 2 / 136302 | 14 | |
kidney tumor | 2 / 68959 | 29 | |
leukemia | 0 / 95842 | 0 | |
liver tumor | 8 / 96359 | 83 | |
lung tumor | 0 / 103127 | 0 | |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 5 / 97250 | 51 | |
normal | 69 / 3360307 | 20 | |
ovarian tumor | 3 / 76682 | 39 | |
pancreatic tumor | 1 / 104616 | 9 | |
primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
prostate cancer | 1 / 102680 | 9 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
uterine tumor | 2 / 90257 | 22 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 1 / 33197 | 30 | |
ascites | 4 / 40015 | 99 | |
bladder | 1 / 29757 | 33 | |
blood | 0 / 123478 | 0 | |
bone | 2 / 71655 | 27 | |
bone marrow | 1 / 48801 | 20 | |
brain | 6 / 1100989 | 5 | |
cervix | 3 / 48171 | 62 | |
connective tissue | 8 / 149255 | 53 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 3 / 215722 | 13 | |
esophagus | 1 / 20209 | 49 | |
eye | 2 / 211054 | 9 | |
heart | 3 / 89626 | 33 | |
intestine | 6 / 234472 | 25 | |
kidney | 7 / 211777 | 33 | |
larynx | 0 / 24145 | 0 | |
liver | 14 / 207743 | 67 | |
lung | 19 / 336974 | 56 | |
lymph | 0 / 44270 | 0 | |
lymph node | 0 / 91610 | 0 | |
mammary gland | 3 / 153271 | 19 | |
mouth | 2 / 67052 | 29 | |
muscle | 5 / 107715 | 46 | |
nerve | 0 / 15768 | 0 | |
ovary | 3 / 102051 | 29 | |
pancreas | 1 / 214812 | 4 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 5 / 280825 | 17 | |
prostate | 4 / 189345 | 21 | |
salivary gland | 1 / 20155 | 49 | |
skin | 1 / 210574 | 4 | |
spleen | 1 / 53952 | 18 | |
stomach | 7 / 96619 | 72 | |
testis | 1 / 330442 | 3 | |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 1 / 52413 | 19 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 7 / 232878 | 30 | |
vascular | 3 / 51780 | 57 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 219749_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 16.55 | |
Adipocyte | 18.8 | |
AdrenalCortex | 20.25 | |
Adrenalgland | 16.75 | |
Amygdala | 19.65 | |
Appendix | 22.65 | |
AtrioventricularNode | 19.65 | |
BDCA4+_DentriticCells | 19.3 | |
Bonemarrow | 24.55 | |
BronchialEpithelialCells | 17.7 | |
CD105+_Endothelial | 16.55 | |
CD14+_Monocytes | 18.85 | |
CD19+_BCells(neg._sel.) | 19.45 | |
CD33+_Myeloid | 23.3 | |
CD34+ | 21.75 | |
CD4+_Tcells | 19.85 | |
CD56+_NKCells | 20.95 | |
CD71+_EarlyErythroid | 18.15 | |
CD8+_Tcells | 14.85 | |
CardiacMyocytes | 26.05 | |
Caudatenucleus | 18.35 | |
Cerebellum | 15.75 | |
CerebellumPeduncles | 23 | |
CiliaryGanglion | 14.15 | |
CingulateCortex | 20.35 | |
Colorectaladenocarcinoma | 24.9 | |
DorsalRootGanglion | 16.1 | |
FetalThyroid | 18.65 | |
Fetalbrain | 19.1 | |
Fetalliver | 17.4 | |
Fetallung | 15.55 | |
GlobusPallidus | 14.75 | |
Heart | 31.7 | |
Hypothalamus | 19.5 | |
Kidney | 21.1 | |
Leukemia_chronicMyelogenousK-562 | 17.3 | |
Leukemia_promyelocytic-HL-60 | 17.1 | |
Leukemialymphoblastic(MOLT-4) | 15.15 | |
Liver | 27.25 | |
Lung | 20.8 | |
Lymphnode | 16.1 | |
Lymphoma_burkitts(Daudi) | 25.15 | |
Lymphoma_burkitts(Raji) | 28.05 | |
MedullaOblongata | 18.5 | |
OccipitalLobe | 17.3 | |
OlfactoryBulb | 14.9 | |
Ovary | 14.1 | |
Pancreas | 16.9 | |
PancreaticIslet | 20.85 | |
ParietalLobe | 21.3 | |
Pituitary | 29.5 | |
Placenta | 19.35 | |
Pons | 24.55 | |
PrefrontalCortex | 19.85 | |
Prostate | 21.55 | |
Salivarygland | 16 | |
SkeletalMuscle | 34.75 | |
Skin | 27.05 | |
SmoothMuscle | 21.45 | |
Spinalcord | 25.6 | |
SubthalamicNucleus | 18.1 | |
SuperiorCervicalGanglion | 29.1 | |
TemporalLobe | 19.75 | |
Testis | 16.35 | |
TestisGermCell | 12.8 | |
TestisIntersitial | 16.55 | |
TestisLeydigCell | 19.05 | |
TestisSeminiferousTubule | 16.25 | |
Thalamus | 19.8 | |
Thymus | 14.65 | |
Thyroid | 23.6 | |
Tongue | 21 | |
Tonsil | 18.8 | |
Trachea | 22.65 | |
TrigeminalGanglion | 23.4 | |
Uterus | 14.95 | |
UterusCorpus | 18.25 | |
WholeBlood | 20.55 | |
Wholebrain | 15.5 | |
colon | 19.15 | |
pineal_day | 21.62 | |
pineal_night | 21.02 | |
retina | 22.85 | |
small_intestine | 18.15 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: CUST_10437_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 2.12 ± 0.89 | |
Basal Forebrain | 1.7 ± 0.31 | |
Basal Part of Pons | 1.41 ± 0.47 | |
Cerebellar Cortex | 1.42 ± 0.62 | |
Cerebellar Nuclei | 1.86 ± 0.7 | |
Claustrum | 2.39 ± 0.8 | |
Epithalamus | 1.46 ± 0.52 | |
Frontal Lobe | 1.44 ± 0.63 | |
Globus Pallidus | 2.26 ± 0.45 | |
Hypothalamus | 1.66 ± 0.67 | |
Insula | 1.46 ± 0.44 | |
Limbic Lobe | 1.65 ± 0.67 | |
Mesencephalon | 1.76 ± 0.67 | |
Myelencephalon | 1.66 ± 0.66 | |
Occipital Lobe | 1.73 ± 0.68 | |
Parietal Lobe | 1.56 ± 0.68 | |
Pontine Tegmentum | 1.66 ± 0.64 | |
Striatum | 1.84 ± 0.56 | |
Subthalamus | 1.73 ± 0.63 | |
Temporal Lobe | 1.53 ± 0.55 | |
Thalamus | 1.69 ± 0.62 | |
White Matter | 2.13 ± 0.33 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Sh2d4a | CB | Cerebellum | 1.77 | |
2.32 | ||||
Sh2d4a | CTX | Cerebral cortex | 0.54 | |
0.87 | ||||
Sh2d4a | HIP | Hippocampal region | 0.18 | |
0.19 | ||||
Sh2d4a | HPF | Hippocampal formation | 0.2 | |
0.21 | ||||
Sh2d4a | HY | Hypothalamus | 0.26 | |
0.23 | ||||
Sh2d4a | LSX | Lateral septal complex | 1.02 | |
0.64 | ||||
Sh2d4a | MB | Midbrain | 0.49 | |
0.83 | ||||
Sh2d4a | MY | Medulla | 2.58 | |
2.89 | ||||
Sh2d4a | OLF | Olfactory bulb | 1.15 | |
1.68 | ||||
Sh2d4a | P | Pons | 2 | |
2.51 | ||||
Sh2d4a | PAL | Pallidum | 0 | |
0 | ||||
Sh2d4a | RHP | Retrohippocampal region | 0.19 | |
0.2 | ||||
Sh2d4a | sAMY | Striatum-like amygdalar nuclei | 0.05 | |
0.09 | ||||
Sh2d4a | STR | Striatum | 0.15 | |
0.15 | ||||
Sh2d4a | STRd | Striatum dorsal region | 0.08 | |
0.13 | ||||
Sh2d4a | STRv | Striatum ventral region | 0.11 | |
0.11 | ||||
Sh2d4a | TH | Thalamus | 0.67 | |
0.48 |