AutismKB 2.0

Annotation Detail for GALNT11


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Basic Information Top
Gene Symbol:GALNT11 ( FLJ21634,MGC71630 )
Gene Full Name: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)
Band: 7q36.1
Quick LinksEntrez ID:63917; OMIM: NA; Uniprot ID:GLT11_HUMAN; ENSEMBL ID: ENSG00000178234; HGNC ID: 19875
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst3 / 6231948
fetus7 / 56401212
neonate0 / 310970 
infant2 / 2362084
juvenile1 / 5555617
adult59 / 193912130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor13 / 26384549
glioma0 / 1068830 
head and neck tumor6 / 13630244
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal113 / 336030733
ovarian tumor2 / 7668226
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood1 / 1234788
bone2 / 7165527
bone marrow1 / 4880120
brain39 / 110098935
cervix0 / 481710 
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye3 / 21105414
heart1 / 8962611
intestine2 / 2344728
kidney32 / 211777151
larynx0 / 241450 
liver4 / 20774319
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland6 / 15327139
mouth2 / 6705229
muscle1 / 1077159
nerve0 / 157680 
ovary3 / 10205129
pancreas13 / 21481260
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta8 / 28082528
prostate1 / 1893455
salivary gland0 / 201550 
skin3 / 21057414
spleen1 / 5395218
stomach5 / 9661951
testis4 / 33044212
thymus3 / 8113136
thyroid6 / 47473126
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219013_at
Cell line Expression level Expression bar
721_B_lymphoblasts13
Adipocyte51.8
AdrenalCortex38.15
Adrenalgland47.85
Amygdala283.1
Appendix24.55
AtrioventricularNode25.1
BDCA4+_DentriticCells43.25
Bonemarrow23.55
BronchialEpithelialCells38.65
CD105+_Endothelial101.15
CD14+_Monocytes94.5
CD19+_BCells(neg._sel.)40.1
CD33+_Myeloid120.35
CD34+59.45
CD4+_Tcells156.9
CD56+_NKCells224.4
CD71+_EarlyErythroid23.55
CD8+_Tcells214.95
CardiacMyocytes33.5
Caudatenucleus65.9
Cerebellum58.15
CerebellumPeduncles56.65
CiliaryGanglion23.5
CingulateCortex108.3
Colorectaladenocarcinoma33.95
DorsalRootGanglion32.3
FetalThyroid94.1
Fetalbrain82.9
Fetalliver22.35
Fetallung37.1
GlobusPallidus55.05
Heart40.7
Hypothalamus246.35
Kidney255.25
Leukemia_chronicMyelogenousK-56236.65
Leukemia_promyelocytic-HL-6013.65
Leukemialymphoblastic(MOLT-4)35.6
Liver51.9
Lung112.9
Lymphnode25.55
Lymphoma_burkitts(Daudi)14.7
Lymphoma_burkitts(Raji)27.05
MedullaOblongata62.5
OccipitalLobe107.1
OlfactoryBulb53.95
Ovary14.05
Pancreas25.75
PancreaticIslet32.5
ParietalLobe63.75
Pituitary84.6
Placenta80.2
Pons39.25
PrefrontalCortex352.15
Prostate173.4
Salivarygland24.15
SkeletalMuscle33.8
Skin26.75
SmoothMuscle20.8
Spinalcord50.4
SubthalamicNucleus91.65
SuperiorCervicalGanglion25.6
TemporalLobe74.1
Testis32.95
TestisGermCell26.4
TestisIntersitial16.25
TestisLeydigCell21.05
TestisSeminiferousTubule16.4
Thalamus190.95
Thymus37.4
Thyroid239.05
Tongue34.1
Tonsil21.05
Trachea23.4
TrigeminalGanglion29
Uterus67.75
UterusCorpus28.95
WholeBlood32.7
Wholebrain298.2
colon72.7
pineal_day469.98
pineal_night806.38
retina278.625
small_intestine91.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P8416
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.67 ± 0.77
Basal Forebrain4.44 ± 0.47
Basal Part of Pons4.96 ± 0.39
Cerebellar Cortex4.9 ± 0.51
Cerebellar Nuclei4.07 ± 0.41
Claustrum4.83 ± 0.42
Epithalamus4.68 ± 0.51
Frontal Lobe5.01 ± 0.5
Globus Pallidus3.64 ± 0.63
Hypothalamus4.82 ± 0.51
Insula5.2 ± 0.34
Limbic Lobe4.82 ± 0.57
Mesencephalon4.71 ± 0.46
Myelencephalon4.76 ± 0.55
Occipital Lobe4.36 ± 0.53
Parietal Lobe4.78 ± 0.46
Pontine Tegmentum4.69 ± 0.58
Striatum4.31 ± 0.65
Subthalamus4.52 ± 0.36
Temporal Lobe5 ± 0.44
Thalamus4.95 ± 0.38
White Matter3.49 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Galnt11CBCerebellum17.55
20.39
Galnt11CTXCerebral cortex55.67
43.59
Galnt11HIPHippocampal region43.5
54.17
Galnt11HPFHippocampal formation51.84
55.67
Galnt11HYHypothalamus33.32
27.8
Galnt11LSXLateral septal complex9.04
6.38
Galnt11MBMidbrain16.06
14.88
Galnt11MYMedulla34.62
40.64
Galnt11OLFOlfactory bulb59.29
49.27
Galnt11PPons33.15
36.09
Galnt11PALPallidum31.73
29.54
Galnt11RHPRetrohippocampal region77.19
65.03
Galnt11sAMYStriatum-like amygdalar nuclei62.08
51.42
Galnt11STRStriatum29.55
22.99
Galnt11STRdStriatum dorsal region21.53
15.84
Galnt11STRvStriatum ventral region44.25
34.17
Galnt11THThalamus24.33
19.87
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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