Annotation Detail for CHTF18
Basic Information Top
| Gene Symbol: | CHTF18 ( C16orf41,C321D2.2,C321D2.3,C321D2.4,CHL12,Ctf18,RUVBL ) |
|---|---|
| Gene Full Name: | CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae) |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:63922; OMIM: 613201; Uniprot ID:CTF18_HUMAN; ENSEMBL ID: ENSG00000127586; HGNC ID: 18435 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.153850
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 27 / 1939121 | 13 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 16 / 263845 | 60 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 7 / 95842 | 73 | |
| liver tumor | 13 / 96359 | 134 | |
| lung tumor | 5 / 103127 | 48 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 51 / 3360307 | 15 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 13 / 207743 | 62 | |
| lung | 5 / 336974 | 14 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 7 / 330442 | 21 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_6845_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.13 ± 0.68 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.44 ± 0.66 | |
| Basal Part of Pons | 3.98 ± 0.56 | |
| Cerebellar Cortex | 3.69 ± 0.45 | |
| Cerebellar Nuclei | 4.91 ± 0.77 | |
| Claustrum | 4.59 ± 0.97 | |
| Epithalamus | 2.92 ± 0.6 | |
| Frontal Lobe | 4.02 ± 0.76 | |
| Globus Pallidus | 4.78 ± 0.73 | |
| Hypothalamus | 3.44 ± 0.71 | |
| Insula | 4.03 ± 0.72 | |
| Limbic Lobe | 4.04 ± 0.77 | |
| Mesencephalon | 4.17 ± 0.66 | |
| Myelencephalon | 4.17 ± 0.82 | |
| Occipital Lobe | 3.95 ± 0.93 | |
| Parietal Lobe | 4.03 ± 0.77 | |
| Pontine Tegmentum | 4.08 ± 0.73 | |
| Striatum | 4.8 ± 0.78 | |
| Subthalamus | 4.56 ± 0.21 | |
| Temporal Lobe | 3.92 ± 0.69 | |
| Thalamus | 4.32 ± 0.56 | |
| White Matter | 4.01 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Chtf18 | CB | Cerebellum | 1.13 | |
| 3.3 | | |||
| Chtf18 | CTX | Cerebral cortex | 1.12 | |
| 1.41 | | |||
| Chtf18 | HIP | Hippocampal region | 0.61 | |
| 0.72 | | |||
| Chtf18 | HPF | Hippocampal formation | 0.56 | |
| 0.83 | | |||
| Chtf18 | HY | Hypothalamus | 0.86 | |
| 0.63 | | |||
| Chtf18 | LSX | Lateral septal complex | 1.06 | |
| 0.72 | | |||
| Chtf18 | MB | Midbrain | 0.57 | |
| 1.14 | | |||
| Chtf18 | MY | Medulla | 0.4 | |
| 0.75 | | |||
| Chtf18 | OLF | Olfactory bulb | 1.61 | |
| 2.7 | | |||
| Chtf18 | P | Pons | 0.56 | |
| 1.59 | | |||
| Chtf18 | PAL | Pallidum | 0.13 | |
| 0.12 | | |||
| Chtf18 | RHP | Retrohippocampal region | 0.22 | |
| 0.52 | | |||
| Chtf18 | sAMY | Striatum-like amygdalar nuclei | 0.08 | |
| 0.1 | | |||
| Chtf18 | STR | Striatum | 0.13 | |
| 0.15 | | |||
| Chtf18 | STRd | Striatum dorsal region | 0.03 | |
| 0.11 | | |||
| Chtf18 | STRv | Striatum ventral region | 0.21 | |
| 0.15 | | |||
| Chtf18 | TH | Thalamus | 0.71 | |
| 0.8 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00009175 | 12 | 551 | 562 | ACINTLQFLYSR | Peptide Atlas |