Annotation Detail for ZNF335
Basic Information Top
| Gene Symbol: | ZNF335 ( NIF-1,NIF1,NIF2 ) |
|---|---|
| Gene Full Name: | zinc finger protein 335 |
| Band: | 20q13.12 |
| Quick Links | Entrez ID:63925; OMIM: 610827; Uniprot ID:ZN335_HUMAN; ENSEMBL ID: ENSG00000198026; HGNC ID: 15807 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.174193
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 52 / 1939121 | 26 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 10 / 114246 | 87 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 7 / 95842 | 73 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 86 / 3360307 | 25 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 2 / 336974 | 5 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 1 / 96619 | 10 | |
| testis | 10 / 330442 | 30 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 221890_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 9.4 | |
| Adipocyte | 3.85 | |
| AdrenalCortex | 4.2 | |
| Adrenalgland | 3.3 | |
| Amygdala | 4.15 | |
| Appendix | 4 | |
| AtrioventricularNode | 3.1 | |
| BDCA4+_DentriticCells | 7.85 | |
| Bonemarrow | 3.95 | |
| BronchialEpithelialCells | 3.85 | |
| CD105+_Endothelial | 3.95 | |
| CD14+_Monocytes | 4.25 | |
| CD19+_BCells(neg._sel.) | 4.25 | |
| CD33+_Myeloid | 5.05 | |
| CD34+ | 5.05 | |
| CD4+_Tcells | 20.65 | |
| CD56+_NKCells | 9.3 | |
| CD71+_EarlyErythroid | 3.7 | |
| CD8+_Tcells | 17.55 | |
| CardiacMyocytes | 4.85 | |
| Caudatenucleus | 3.55 | |
| Cerebellum | 3.25 | |
| CerebellumPeduncles | 4.5 | |
| CiliaryGanglion | 2.85 | |
| CingulateCortex | 4.1 | |
| Colorectaladenocarcinoma | 4.1 | |
| DorsalRootGanglion | 3.15 | |
| FetalThyroid | 3.95 | |
| Fetalbrain | 4.05 | |
| Fetalliver | 3.5 | |
| Fetallung | 3.25 | |
| GlobusPallidus | 3 | |
| Heart | 5.1 | |
| Hypothalamus | 4.25 | |
| Kidney | 3.25 | |
| Leukemia_chronicMyelogenousK-562 | 3.65 | |
| Leukemia_promyelocytic-HL-60 | 3.5 | |
| Leukemialymphoblastic(MOLT-4) | 3.2 | |
| Liver | 5.3 | |
| Lung | 4.9 | |
| Lymphnode | 4.35 | |
| Lymphoma_burkitts(Daudi) | 5.1 | |
| Lymphoma_burkitts(Raji) | 7.35 | |
| MedullaOblongata | 3.6 | |
| OccipitalLobe | 3.55 | |
| OlfactoryBulb | 3.1 | |
| Ovary | 2.9 | |
| Pancreas | 3.2 | |
| PancreaticIslet | 4.2 | |
| ParietalLobe | 4.3 | |
| Pituitary | 4.8 | |
| Placenta | 4.1 | |
| Pons | 3.8 | |
| PrefrontalCortex | 4.95 | |
| Prostate | 4.7 | |
| Salivarygland | 3.15 | |
| SkeletalMuscle | 4.65 | |
| Skin | 3.3 | |
| SmoothMuscle | 4.45 | |
| Spinalcord | 4.25 | |
| SubthalamicNucleus | 3.7 | |
| SuperiorCervicalGanglion | 4.6 | |
| TemporalLobe | 3.65 | |
| Testis | 3.4 | |
| TestisGermCell | 3.35 | |
| TestisIntersitial | 3.4 | |
| TestisLeydigCell | 4 | |
| TestisSeminiferousTubule | 3.4 | |
| Thalamus | 4.05 | |
| Thymus | 4.15 | |
| Thyroid | 4.9 | |
| Tongue | 3.95 | |
| Tonsil | 4.6 | |
| Trachea | 3.3 | |
| TrigeminalGanglion | 4.05 | |
| Uterus | 3.25 | |
| UterusCorpus | 3.6 | |
| WholeBlood | 4.3 | |
| Wholebrain | 3.35 | |
| colon | 3.95 | |
| pineal_day | 4.94 | |
| pineal_night | 4.88 | |
| retina | 4.8 | |
| small_intestine | 3.85 | |
- Probe name: CUST_14943_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.39 ± 0.36 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.17 ± 0.59 | |
| Basal Part of Pons | 5.63 ± 0.34 | |
| Cerebellar Cortex | 5.78 ± 0.29 | |
| Cerebellar Nuclei | 5.26 ± 0.51 | |
| Claustrum | 4.88 ± 0.39 | |
| Epithalamus | 5.35 ± 0.39 | |
| Frontal Lobe | 5.46 ± 0.42 | |
| Globus Pallidus | 4.59 ± 0.28 | |
| Hypothalamus | 5.4 ± 0.39 | |
| Insula | 5.45 ± 0.4 | |
| Limbic Lobe | 5.42 ± 0.47 | |
| Mesencephalon | 5.28 ± 0.36 | |
| Myelencephalon | 5.38 ± 0.45 | |
| Occipital Lobe | 5.35 ± 0.36 | |
| Parietal Lobe | 5.36 ± 0.41 | |
| Pontine Tegmentum | 5.21 ± 0.51 | |
| Striatum | 5.14 ± 0.41 | |
| Subthalamus | 5.32 ± 0.15 | |
| Temporal Lobe | 5.55 ± 0.37 | |
| Thalamus | 5.32 ± 0.41 | |
| White Matter | 4.91 ± 0.19 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Zfp335 | CB | Cerebellum | 15.61 | |
| 17.31 | | |||
| Zfp335 | CTX | Cerebral cortex | 35.87 | |
| 26.58 | | |||
| Zfp335 | HIP | Hippocampal region | 29.44 | |
| 33.32 | | |||
| Zfp335 | HPF | Hippocampal formation | 27.17 | |
| 26.02 | | |||
| Zfp335 | HY | Hypothalamus | 7.8 | |
| 5.37 | | |||
| Zfp335 | LSX | Lateral septal complex | 7.84 | |
| 4.68 | | |||
| Zfp335 | MB | Midbrain | 16.82 | |
| 15.62 | | |||
| Zfp335 | MY | Medulla | 14.92 | |
| 14.56 | | |||
| Zfp335 | OLF | Olfactory bulb | 37.53 | |
| 28.29 | | |||
| Zfp335 | P | Pons | 12 | |
| 11.49 | | |||
| Zfp335 | PAL | Pallidum | 15.44 | |
| 11.81 | | |||
| Zfp335 | RHP | Retrohippocampal region | 23.18 | |
| 15.71 | | |||
| Zfp335 | sAMY | Striatum-like amygdalar nuclei | 19.54 | |
| 12.78 | | |||
| Zfp335 | STR | Striatum | 19.24 | |
| 12.41 | | |||
| Zfp335 | STRd | Striatum dorsal region | 19.22 | |
| 12.54 | | |||
| Zfp335 | STRv | Striatum ventral region | 26.21 | |
| 16.16 | | |||
| Zfp335 | TH | Thalamus | 17.63 | |
| 12.99 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00504864 | 28 | 409 | 436 | TPVEAGVSQSDAENAAPSCPDEHDTLPR | Peptide Atlas |
| ZN335_HUMAN_350 | 6 | 350 | 355 | RPGRPR | PRIDE |