AutismKB 2.0

Annotation Detail for SELP


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Basic Information Top
Gene Symbol:SELP ( CD62,CD62P,FLJ45155,GMP140,GRMP,LECAM3,PADGEM,PSEL )
Gene Full Name: selectin P (granule membrane protein 140kDa, antigen CD62)
Band: 1q24.2
Quick LinksEntrez ID:6403; OMIM: 173610; Uniprot ID:LYAM3_HUMAN; ENSEMBL ID: ENSG00000174175; HGNC ID: 10721
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult31 / 193912115
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia15 / 97250154
normal49 / 336030714
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone1 / 7165513
bone marrow0 / 488010 
brain2 / 11009891
cervix0 / 481710 
connective tissue16 / 149255107
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus1 / 2020949
eye1 / 2110544
heart0 / 896260 
intestine4 / 23447217
kidney2 / 2117779
larynx2 / 2414582
liver0 / 2077430 
lung8 / 33697423
lymph0 / 442700 
lymph node0 / 916100 
mammary gland4 / 15327126
mouth1 / 6705214
muscle1 / 1077159
nerve1 / 1576863
ovary0 / 1020510 
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta13 / 28082546
prostate4 / 18934521
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis1 / 3304423
thymus6 / 8113173
thyroid1 / 4747321
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206049_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.35
Adipocyte3.4
AdrenalCortex3.5
Adrenalgland2.9
Amygdala3.7
Appendix4.1
AtrioventricularNode2.75
BDCA4+_DentriticCells3.8
Bonemarrow3.45
BronchialEpithelialCells3.45
CD105+_Endothelial3.5
CD14+_Monocytes3.75
CD19+_BCells(neg._sel.)3.75
CD33+_Myeloid4.5
CD34+6
CD4+_Tcells3.9
CD56+_NKCells4.15
CD71+_EarlyErythroid3.2
CD8+_Tcells3.4
CardiacMyocytes4.5
Caudatenucleus3.05
Cerebellum2.8
CerebellumPeduncles3.9
CiliaryGanglion2.75
CingulateCortex3.55
Colorectaladenocarcinoma3.45
DorsalRootGanglion2.95
FetalThyroid3.4
Fetalbrain3.45
Fetalliver3
Fetallung3
GlobusPallidus2.5
Heart4.35
Hypothalamus3.75
Kidney2.8
Leukemia_chronicMyelogenousK-5623.15
Leukemia_promyelocytic-HL-603.1
Leukemialymphoblastic(MOLT-4)2.8
Liver4.55
Lung4.5
Lymphnode3.65
Lymphoma_burkitts(Daudi)4.4
Lymphoma_burkitts(Raji)4.85
MedullaOblongata3.25
OccipitalLobe3.1
OlfactoryBulb2.75
Ovary2.3
Pancreas2.8
PancreaticIslet3.9
ParietalLobe3.6
Pituitary4.05
Placenta3.6
Pons3.5
PrefrontalCortex4.35
Prostate4.1
Salivarygland3.7
SkeletalMuscle3.9
Skin2.6
SmoothMuscle3.9
Spinalcord3.65
SubthalamicNucleus3.15
SuperiorCervicalGanglion5.1
TemporalLobe3.2
Testis3.3
TestisGermCell2.95
TestisIntersitial2.9
TestisLeydigCell3.45
TestisSeminiferousTubule2.95
Thalamus3.45
Thymus2.85
Thyroid4.35
Tongue3.6
Tonsil3.65
Trachea2.95
TrigeminalGanglion3.5
Uterus4.2
UterusCorpus3.15
WholeBlood18.1
Wholebrain2.95
colon3.5
pineal_day4.36
pineal_night4.28
retina7.35
small_intestine3.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15491_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.84 ± 1.04
Basal Forebrain2.45 ± 0.29
Basal Part of Pons2.49 ± 0.56
Cerebellar Cortex2.26 ± 0.7
Cerebellar Nuclei2.69 ± 0.71
Claustrum3.34 ± 0.84
Epithalamus2.15 ± 0.67
Frontal Lobe2.21 ± 0.76
Globus Pallidus2.85 ± 0.55
Hypothalamus2.48 ± 0.54
Insula2.09 ± 0.63
Limbic Lobe2.32 ± 0.66
Mesencephalon2.56 ± 0.64
Myelencephalon2.39 ± 0.68
Occipital Lobe2.45 ± 0.64
Parietal Lobe2.4 ± 0.65
Pontine Tegmentum2.34 ± 0.76
Striatum2.57 ± 0.69
Subthalamus2.55 ± 0.72
Temporal Lobe2.32 ± 0.74
Thalamus2.35 ± 0.62
White Matter2.97 ± 0.64
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
SelpCBCerebellum1.37
1.77
SelpCTXCerebral cortex1.4
1.19
SelpHIPHippocampal region0.26
0.26
SelpHPFHippocampal formation0.34
0.35
SelpHYHypothalamus0.66
0.37
SelpLSXLateral septal complex0.26
0.27
SelpMBMidbrain0.84
0.79
SelpMYMedulla1.87
1.86
SelpOLFOlfactory bulb3.56
4.17
SelpPPons0.94
0.55
SelpPALPallidum0.19
0.19
SelpRHPRetrohippocampal region0.41
0.46
SelpsAMYStriatum-like amygdalar nuclei0.28
0.29
SelpSTRStriatum0.34
0.31
SelpSTRdStriatum dorsal region0.37
0.32
SelpSTRvStriatum ventral region0.26
0.26
SelpTHThalamus0.93
0.65
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00094389 8 88 95 SYYWIGIR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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