AutismKB 2.0

Annotation Detail for SEMG2


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Basic Information Top
Gene Symbol:SEMG2 ( SGII )
Gene Full Name: semenogelin II
Band: 20q13.12
Quick LinksEntrez ID:6407; OMIM: 182141; Uniprot ID:SEMG2_HUMAN; ENSEMBL ID: ENSG00000124157; HGNC ID: 10743
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult18 / 19391219
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal850 / 3360307252
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle8 / 10771574
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate854 / 1893454510
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 216030_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.05
Adipocyte10.05
AdrenalCortex16
Adrenalgland9.75
Amygdala9.25
Appendix16.25
AtrioventricularNode16.35
BDCA4+_DentriticCells9.85
Bonemarrow12.4
BronchialEpithelialCells9.8
CD105+_Endothelial10.25
CD14+_Monocytes11.4
CD19+_BCells(neg._sel.)10.55
CD33+_Myeloid12.6
CD34+12.3
CD4+_Tcells9.55
CD56+_NKCells11.45
CD71+_EarlyErythroid10.1
CD8+_Tcells9.5
CardiacMyocytes23.2
Caudatenucleus9.35
Cerebellum8.55
CerebellumPeduncles13.75
CiliaryGanglion13.1
CingulateCortex11.55
Colorectaladenocarcinoma10.45
DorsalRootGanglion11.8
FetalThyroid10.85
Fetalbrain9.95
Fetalliver9.4
Fetallung7.25
GlobusPallidus8.95
Heart20
Hypothalamus10.45
Kidney10.65
Leukemia_chronicMyelogenousK-5629.35
Leukemia_promyelocytic-HL-608.9
Leukemialymphoblastic(MOLT-4)7.45
Liver18.3
Lung11.2
Lymphnode8.3
Lymphoma_burkitts(Daudi)14.3
Lymphoma_burkitts(Raji)17.5
MedullaOblongata9.2
OccipitalLobe9.15
OlfactoryBulb7.95
Ovary8.8
Pancreas9.45
PancreaticIslet11.45
ParietalLobe12.25
Pituitary12.6
Placenta9.95
Pons10.9
PrefrontalCortex12.2
Prostate574.7
Salivarygland9.2
SkeletalMuscle20.9
Skin15.25
SmoothMuscle11.55
Spinalcord10.8
SubthalamicNucleus10.45
SuperiorCervicalGanglion19.25
TemporalLobe10.05
Testis8.85
TestisGermCell8.05
TestisIntersitial9.15
TestisLeydigCell12
TestisSeminiferousTubule8.9
Thalamus11
Thymus7.2
Thyroid11.95
Tongue13.65
Tonsil10.8
Trachea8.45
TrigeminalGanglion17.35
Uterus8.05
UterusCorpus13.15
WholeBlood11.3
Wholebrain7.85
colon10.3
pineal_day12.1
pineal_night11.9
retina12.45
small_intestine9.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12277_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.13 ± 0.55
Basal Forebrain6.46 ± 0.38
Basal Part of Pons6.5 ± 0.31
Cerebellar Cortex5.94 ± 0.32
Cerebellar Nuclei7.06 ± 0.6
Claustrum6.43 ± 0.39
Epithalamus6.84 ± 0.6
Frontal Lobe6.52 ± 0.54
Globus Pallidus7.49 ± 0.39
Hypothalamus6.71 ± 0.87
Insula6.27 ± 0.57
Limbic Lobe6.17 ± 0.53
Mesencephalon6.53 ± 0.57
Myelencephalon6.52 ± 0.48
Occipital Lobe5.95 ± 0.56
Parietal Lobe6.4 ± 0.45
Pontine Tegmentum6.28 ± 0.49
Striatum6.29 ± 0.58
Subthalamus6.74 ± 0.14
Temporal Lobe6.34 ± 0.54
Thalamus6.46 ± 0.33
White Matter7.27 ± 0.56
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00092179 13 488 500 DVSQSSISFQIEK Peptide Atlas
SEMG2_HUMAN_483 17 483 499 STQKDVSQSSISFQIEK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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