Annotation Detail for CDH23
Basic Information Top
| Gene Symbol: | CDH23 ( CDHR23,DKFZp434P2350,FLJ00233,FLJ36499,KIAA1774,KIAA1812,MGC102761,USH1D ) |
|---|---|
| Gene Full Name: | cadherin-related 23 |
| Band: | 10q22.1 |
| Quick Links | Entrez ID:64072; OMIM: 605516; Uniprot ID:CAD23_HUMAN; ENSEMBL ID: ENSG00000107736; HGNC ID: 13733 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.656032
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 7 / 564012 | 12 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 37 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 32 / 3360307 | 9 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 9 / 46356 | 194 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 14 / 1100989 | 12 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 19 / 211054 | 90 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 0 / 96619 | 0 | |
| testis | 3 / 330442 | 9 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_16133_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.05 ± 0.96 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.55 ± 0.42 | |
| Basal Part of Pons | 3.32 ± 0.57 | |
| Cerebellar Cortex | 3.47 ± 0.47 | |
| Cerebellar Nuclei | 2.71 ± 0.78 | |
| Claustrum | 3.27 ± 0.79 | |
| Epithalamus | 2.62 ± 0.81 | |
| Frontal Lobe | 2.46 ± 0.81 | |
| Globus Pallidus | 3.21 ± 1.03 | |
| Hypothalamus | 2.43 ± 0.57 | |
| Insula | 2.24 ± 0.63 | |
| Limbic Lobe | 2.47 ± 0.79 | |
| Mesencephalon | 2.76 ± 0.82 | |
| Myelencephalon | 2.67 ± 0.77 | |
| Occipital Lobe | 2.91 ± 0.82 | |
| Parietal Lobe | 2.6 ± 0.89 | |
| Pontine Tegmentum | 2.48 ± 0.76 | |
| Striatum | 2.39 ± 0.85 | |
| Subthalamus | 3.42 ± 0.26 | |
| Temporal Lobe | 2.51 ± 0.74 | |
| Thalamus | 2.81 ± 0.62 | |
| White Matter | 2.53 ± 0.56 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cdh23 | CB | Cerebellum | 0.73 | |
| 0.86 | | |||
| Cdh23 | CTX | Cerebral cortex | 0.58 | |
| 0.54 | | |||
| Cdh23 | HIP | Hippocampal region | 0.55 | |
| 0.52 | | |||
| Cdh23 | HPF | Hippocampal formation | 0.69 | |
| 0.61 | | |||
| Cdh23 | HY | Hypothalamus | 5.97 | |
| 5.05 | | |||
| Cdh23 | LSX | Lateral septal complex | 3.78 | |
| 2.77 | | |||
| Cdh23 | MB | Midbrain | 2.45 | |
| 2.25 | | |||
| Cdh23 | MY | Medulla | 2.99 | |
| 3.94 | | |||
| Cdh23 | OLF | Olfactory bulb | 4.35 | |
| 4.33 | | |||
| Cdh23 | P | Pons | 9.09 | |
| 11.96 | | |||
| Cdh23 | PAL | Pallidum | 1.11 | |
| 0.99 | | |||
| Cdh23 | RHP | Retrohippocampal region | 0.87 | |
| 0.69 | | |||
| Cdh23 | sAMY | Striatum-like amygdalar nuclei | 1.35 | |
| 1.24 | | |||
| Cdh23 | STR | Striatum | 0.63 | |
| 0.51 | | |||
| Cdh23 | STRd | Striatum dorsal region | 0.18 | |
| 0.13 | | |||
| Cdh23 | STRv | Striatum ventral region | 0.81 | |
| 0.75 | | |||
| Cdh23 | TH | Thalamus | 3.15 | |
| 3.44 | |