Annotation Detail for SMOC2
Basic Information Top
| Gene Symbol: | SMOC2 ( MST117,MSTP117,MSTP140,SMAP2,bA270C4A.1,bA37D8.1,dJ421D16.1 ) |
|---|---|
| Gene Full Name: | SPARC related modular calcium binding 2 |
| Band: | 6q27 |
| Quick Links | Entrez ID:64094; OMIM: 607223; Uniprot ID:SMOC2_HUMAN; ENSEMBL ID: ENSG00000112562; HGNC ID: 20323 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.487200
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 26 / 564012 | 46 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 134 / 1939121 | 69 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 11 / 82823 | 132 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 11 / 119369 | 92 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 14 / 97250 | 143 | |
| normal | 174 / 3360307 | 51 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 11 / 104616 | 105 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 |  |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 7 / 90257 | 77 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 4 / 13106 | 305 |  |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 21 / 1100989 | 19 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 29 / 149255 | 194 | |
| ear | 6 / 16212 | 370 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 28 / 211054 | 132 | |
| heart | 12 / 89626 | 133 | |
| intestine | 21 / 234472 | 89 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 11 / 214812 | 51 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 17 / 280825 | 60 | |
| prostate | 15 / 189345 | 79 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 13 / 96619 | 134 | |
| testis | 47 / 330442 | 142 | |
| thymus | 8 / 81131 | 98 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 35 / 232878 | 150 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_5459_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.76 ± 0.99 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.6 ± 0.41 | |
| Basal Part of Pons | 4.05 ± 0.44 | |
| Cerebellar Cortex | 2.95 ± 0.41 | |
| Cerebellar Nuclei | 4.44 ± 0.54 | |
| Claustrum | 3.57 ± 0.62 | |
| Epithalamus | 3.16 ± 1.2 | |
| Frontal Lobe | 3.28 ± 0.87 | |
| Globus Pallidus | 4.77 ± 0.57 | |
| Hypothalamus | 2.93 ± 0.89 | |
| Insula | 3.36 ± 0.63 | |
| Limbic Lobe | 3.42 ± 0.79 | |
| Mesencephalon | 3.76 ± 0.86 | |
| Myelencephalon | 3.68 ± 0.92 | |
| Occipital Lobe | 4.02 ± 0.84 | |
| Parietal Lobe | 3.7 ± 0.85 | |
| Pontine Tegmentum | 3.75 ± 0.79 | |
| Striatum | 5.95 ± 0.79 | |
| Subthalamus | 4.18 ± 0.59 | |
| Temporal Lobe | 3.35 ± 0.64 | |
| Thalamus | 3.74 ± 0.72 | |
| White Matter | 3.87 ± 1.09 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Smoc2 | CB | Cerebellum | 1.93 | |
| 3.29 | | |||
| Smoc2 | CTX | Cerebral cortex | 12.57 | |
| 11.56 | | |||
| Smoc2 | HIP | Hippocampal region | 29.93 | |
| 54.01 | | |||
| Smoc2 | HPF | Hippocampal formation | 18.76 | |
| 30.43 | | |||
| Smoc2 | HY | Hypothalamus | 0.48 | |
| 0.51 | | |||
| Smoc2 | LSX | Lateral septal complex | 0.21 | |
| 0.14 | | |||
| Smoc2 | MB | Midbrain | 1.35 | |
| 1.89 | | |||
| Smoc2 | MY | Medulla | 3.85 | |
| 4.52 | | |||
| Smoc2 | OLF | Olfactory bulb | 7.52 | |
| 7.12 | | |||
| Smoc2 | P | Pons | 1.3 | |
| 1.74 | | |||
| Smoc2 | PAL | Pallidum | 0.2 | |
| 0.21 | | |||
| Smoc2 | RHP | Retrohippocampal region | 3.94 | |
| 4.03 | | |||
| Smoc2 | sAMY | Striatum-like amygdalar nuclei | 0.79 | |
| 0.95 | | |||
| Smoc2 | STR | Striatum | 1.67 | |
| 1.58 | | |||
| Smoc2 | STRd | Striatum dorsal region | 2.25 | |
| 2.18 | | |||
| Smoc2 | STRv | Striatum ventral region | 0.22 | |
| 0.19 | | |||
| Smoc2 | TH | Thalamus | 2.95 | |
| 5.51 | |