AutismKB 2.0

Annotation Detail for MAGEF1


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Basic Information Top
Gene Symbol:MAGEF1 ( MGC19617 )
Gene Full Name: melanoma antigen family F, 1
Band: 3q27.1
Quick LinksEntrez ID:64110; OMIM: 609267; Uniprot ID:MAGF1_HUMAN; ENSEMBL ID: ENSG00000177383; HGNC ID: 29639
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus21 / 56401237
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult100 / 193912151
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor18 / 94178191
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor3 / 11424626
esophageal tumor2 / 17290115
gastrointestinal tumor5 / 11936941
germ cell tumor24 / 26384590
glioma3 / 10688328
head and neck tumor3 / 13630222
kidney tumor4 / 6895958
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor15 / 103127145
lymphoma6 / 7175583
non-neoplasia0 / 972500 
normal145 / 336030743
ovarian tumor3 / 7668239
pancreatic tumor10 / 10461695
primitive neuroectodermal tumor of the CNS11 / 12568087
prostate cancer6 / 10268058
retinoblastoma3 / 4635664
skin tumor29 / 124949232
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood3 / 12347824
bone3 / 7165541
bone marrow0 / 488010 
brain67 / 110098960
cervix0 / 481710 
connective tissue1 / 1492556
ear2 / 16212123
embryonic tissue7 / 21572232
esophagus2 / 2020998
eye21 / 21105499
heart2 / 8962622
intestine7 / 23447229
kidney7 / 21177733
larynx0 / 241450 
liver2 / 2077439
lung31 / 33697491
lymph6 / 44270135
lymph node1 / 9161010
mammary gland19 / 153271123
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary7 / 10205168
pancreas24 / 214812111
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta28 / 28082599
prostate17 / 18934589
salivary gland2 / 2015599
skin29 / 210574137
spleen1 / 5395218
stomach7 / 9661972
testis6 / 33044218
thymus0 / 811310 
thyroid1 / 4747321
tonsil8 / 16999470
trachea0 / 524130 
umbilical cord0 / 136800 
uterus15 / 23287864
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218176_at
Cell line Expression level Expression bar
721_B_lymphoblasts36.15
Adipocyte8.85
AdrenalCortex11.25
Adrenalgland11.9
Amygdala20.7
Appendix9.4
AtrioventricularNode7.75
BDCA4+_DentriticCells11.25
Bonemarrow8.85
BronchialEpithelialCells14.05
CD105+_Endothelial10.65
CD14+_Monocytes13.25
CD19+_BCells(neg._sel.)35.3
CD33+_Myeloid18.35
CD34+36.85
CD4+_Tcells15.75
CD56+_NKCells24.85
CD71+_EarlyErythroid9.8
CD8+_Tcells10.8
CardiacMyocytes10.3
Caudatenucleus16.65
Cerebellum15.95
CerebellumPeduncles26.65
CiliaryGanglion7.5
CingulateCortex22.2
Colorectaladenocarcinoma58.6
DorsalRootGanglion7.85
FetalThyroid14.05
Fetalbrain26.35
Fetalliver8.3
Fetallung13.5
GlobusPallidus18.7
Heart13.15
Hypothalamus37.65
Kidney11.35
Leukemia_chronicMyelogenousK-56210.4
Leukemia_promyelocytic-HL-6014.15
Leukemialymphoblastic(MOLT-4)10.35
Liver13.15
Lung28.85
Lymphnode7.45
Lymphoma_burkitts(Daudi)21.9
Lymphoma_burkitts(Raji)17
MedullaOblongata14.65
OccipitalLobe24.2
OlfactoryBulb9.95
Ovary5.9
Pancreas11.85
PancreaticIslet26.45
ParietalLobe17.6
Pituitary50.1
Placenta21.65
Pons12.25
PrefrontalCortex28.95
Prostate31.6
Salivarygland11.25
SkeletalMuscle10.4
Skin8.6
SmoothMuscle11.85
Spinalcord15.25
SubthalamicNucleus21.9
SuperiorCervicalGanglion9.3
TemporalLobe15.15
Testis10.6
TestisGermCell9.65
TestisIntersitial8.8
TestisLeydigCell10.4
TestisSeminiferousTubule7.35
Thalamus18.35
Thymus11.05
Thyroid36.55
Tongue8.85
Tonsil10.35
Trachea11.6
TrigeminalGanglion11.65
Uterus26.1
UterusCorpus13.7
WholeBlood7.35
Wholebrain53.6
colon14.3
pineal_day51.54
pineal_night52.16
retina28.025
small_intestine13.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_216_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.94 ± 0.61
Basal Forebrain4.89 ± 0.42
Basal Part of Pons5.69 ± 0.44
Cerebellar Cortex5.52 ± 0.47
Cerebellar Nuclei4.94 ± 0.57
Claustrum4.3 ± 0.94
Epithalamus5.38 ± 0.58
Frontal Lobe5.26 ± 0.58
Globus Pallidus4.15 ± 0.34
Hypothalamus5.28 ± 0.71
Insula5.38 ± 0.4
Limbic Lobe4.77 ± 0.74
Mesencephalon4.87 ± 0.64
Myelencephalon4.97 ± 0.68
Occipital Lobe4.51 ± 0.62
Parietal Lobe4.95 ± 0.62
Pontine Tegmentum4.96 ± 0.65
Striatum4.38 ± 0.57
Subthalamus4.54 ± 0.32
Temporal Lobe5.25 ± 0.53
Thalamus5.01 ± 0.6
White Matter4.09 ± 0.59
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
6430590I03RikCBCerebellum8.03
9.4
6430590I03RikCTXCerebral cortex42.35
28.94
6430590I03RikHIPHippocampal region13.23
14.69
6430590I03RikHPFHippocampal formation12.7
11.92
6430590I03RikHYHypothalamus11.92
8.49
6430590I03RikLSXLateral septal complex1.78
1.1
6430590I03RikMBMidbrain12.16
9.57
6430590I03RikMYMedulla11.7
10.41
6430590I03RikOLFOlfactory bulb27.07
20.24
6430590I03RikPPons16.69
14.34
6430590I03RikPALPallidum6.42
4.99
6430590I03RikRHPRetrohippocampal region12.49
8.39
6430590I03RiksAMYStriatum-like amygdalar nuclei1.74
1.32
6430590I03RikSTRStriatum7.56
5.12
6430590I03RikSTRdStriatum dorsal region7.35
4.92
6430590I03RikSTRvStriatum ventral region15.06
9.99
6430590I03RikTHThalamus10.61
7.15
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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