Annotation Detail for C10orf54
Basic Information Top
| Gene Symbol: | C10orf54 ( GI24,PP2135,SISP1 ) |
|---|---|
| Gene Full Name: | chromosome 10 open reading frame 54 |
| Band: | 10q22.1 |
| Quick Links | Entrez ID:64115; OMIM: NA; Uniprot ID:GI24_HUMAN; ENSEMBL ID: ENSG00000107738; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.47382
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 180 / 1939121 | 92 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 1 / 263845 | 3 |  |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 19 / 95842 | 198 | |
| liver tumor | 59 / 96359 | 612 |  |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 204 / 3360307 | 60 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 7 / 102680 | 68 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 1 / 29757 | 33 | |
| blood | 18 / 123478 | 145 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 5 / 48801 | 102 | |
| brain | 35 / 1100989 | 31 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 14 / 211054 | 66 | |
| heart | 5 / 89626 | 55 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 59 / 207743 | 284 | |
| lung | 15 / 336974 | 44 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 4 / 15768 | 253 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 69 / 280825 | 245 | |
| prostate | 11 / 189345 | 58 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 6 / 53952 | 111 | |
| stomach | 2 / 96619 | 20 | |
| testis | 4 / 330442 | 12 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1500_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.88 ± 0.78 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.14 ± 0.73 | |
| Basal Part of Pons | 6.5 ± 0.42 | |
| Cerebellar Cortex | 6.09 ± 0.35 | |
| Cerebellar Nuclei | 7.04 ± 0.44 | |
| Claustrum | 7.2 ± 0.94 | |
| Epithalamus | 5.73 ± 0.69 | |
| Frontal Lobe | 6.75 ± 0.77 | |
| Globus Pallidus | 7.75 ± 0.52 | |
| Hypothalamus | 6.49 ± 0.65 | |
| Insula | 6.48 ± 0.7 | |
| Limbic Lobe | 6.74 ± 0.89 | |
| Mesencephalon | 7.06 ± 0.71 | |
| Myelencephalon | 6.9 ± 0.85 | |
| Occipital Lobe | 6.89 ± 0.83 | |
| Parietal Lobe | 6.81 ± 0.77 | |
| Pontine Tegmentum | 6.86 ± 0.66 | |
| Striatum | 7.63 ± 0.71 | |
| Subthalamus | 6.52 ± 0.72 | |
| Temporal Lobe | 6.7 ± 0.83 | |
| Thalamus | 7.19 ± 0.71 | |
| White Matter | 6.01 ± 0.56 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4632428N05Rik | CB | Cerebellum | 5.85 | |
| 6.44 | | |||
| 4632428N05Rik | CTX | Cerebral cortex | 26.28 | |
| 10.73 | | |||
| 4632428N05Rik | HIP | Hippocampal region | 20.13 | |
| 10.52 | | |||
| 4632428N05Rik | HPF | Hippocampal formation | 21.91 | |
| 10.37 | | |||
| 4632428N05Rik | HY | Hypothalamus | 19.71 | |
| 7.09 | | |||
| 4632428N05Rik | LSX | Lateral septal complex | 24.32 | |
| 8.49 | | |||
| 4632428N05Rik | MB | Midbrain | 9.08 | |
| 4.16 | | |||
| 4632428N05Rik | MY | Medulla | 5.9 | |
| 2.74 | | |||
| 4632428N05Rik | OLF | Olfactory bulb | 38.03 | |
| 15.16 | | |||
| 4632428N05Rik | P | Pons | 6.52 | |
| 2.61 | | |||
| 4632428N05Rik | PAL | Pallidum | 25.08 | |
| 9.73 | | |||
| 4632428N05Rik | RHP | Retrohippocampal region | 25.13 | |
| 10.3 | | |||
| 4632428N05Rik | sAMY | Striatum-like amygdalar nuclei | 24.99 | |
| 10.09 | | |||
| 4632428N05Rik | STR | Striatum | 25.02 | |
| 9.7 | | |||
| 4632428N05Rik | STRd | Striatum dorsal region | 21.79 | |
| 8.26 | | |||
| 4632428N05Rik | STRv | Striatum ventral region | 36.47 | |
| 14.25 | | |||
| 4632428N05Rik | TH | Thalamus | 8.41 | |
| 3.1 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00010196 | 9 | 78 | 86 | GEVQTCSER | Peptide Atlas |