Annotation Detail for ZFYVE20
Basic Information Top
| Gene Symbol: | ZFYVE20 ( FLJ34993,MGC126210,Rabenosyn-5 ) |
|---|---|
| Gene Full Name: | zinc finger, FYVE domain containing 20 |
| Band: | 3p25.1 |
| Quick Links | Entrez ID:64145; OMIM: 609511; Uniprot ID:RBNS5_HUMAN; ENSEMBL ID: ENSG00000131381; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.475565
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 37 / 564012 | 65 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 54 / 1939121 | 27 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 15 / 263845 | 56 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 107 / 3360307 | 31 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 46 / 1100989 | 41 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 15 / 211054 | 71 | |
| heart | 4 / 89626 | 44 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 1 / 24145 | 41 | |
| liver | 1 / 207743 | 4 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 7 / 330442 | 21 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P85181
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.1 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.23 ± 0.12 | |
| Basal Part of Pons | 8.4 ± 0.24 | |
| Cerebellar Cortex | 8.18 ± 0.68 | |
| Cerebellar Nuclei | 8.15 ± 0.38 | |
| Claustrum | 7.95 ± 0.78 | |
| Epithalamus | 7.92 ± 0.54 | |
| Frontal Lobe | 8.39 ± 0.39 | |
| Globus Pallidus | 8.32 ± 0.17 | |
| Hypothalamus | 8.18 ± 0.58 | |
| Insula | 8.51 ± 0.29 | |
| Limbic Lobe | 8.06 ± 0.52 | |
| Mesencephalon | 8.26 ± 0.49 | |
| Myelencephalon | 8.2 ± 0.52 | |
| Occipital Lobe | 7.79 ± 0.52 | |
| Parietal Lobe | 8.26 ± 0.4 | |
| Pontine Tegmentum | 8.26 ± 0.33 | |
| Striatum | 7.98 ± 0.32 | |
| Subthalamus | 8.8 ± 0.15 | |
| Temporal Lobe | 8.4 ± 0.41 | |
| Thalamus | 8.23 ± 0.41 | |
| White Matter | 8.49 ± 0.11 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Zfyve20 | CB | Cerebellum | 53.02 | |
| 80.29 | | |||
| Zfyve20 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Zfyve20 | HIP | Hippocampal region | 95.53 | |
| 100 | | |||
| Zfyve20 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Zfyve20 | HY | Hypothalamus | 92.07 | |
| 83.1 | | |||
| Zfyve20 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Zfyve20 | MB | Midbrain | 93.8 | |
| 92.12 | | |||
| Zfyve20 | MY | Medulla | 72.08 | |
| 83.73 | | |||
| Zfyve20 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Zfyve20 | P | Pons | 80.42 | |
| 91.68 | | |||
| Zfyve20 | PAL | Pallidum | 89.42 | |
| 88.22 | | |||
| Zfyve20 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Zfyve20 | sAMY | Striatum-like amygdalar nuclei | 94.44 | |
| 73.31 | | |||
| Zfyve20 | STR | Striatum | 100 | |
| 87.14 | | |||
| Zfyve20 | STRd | Striatum dorsal region | 100 | |
| 87.21 | | |||
| Zfyve20 | STRv | Striatum ventral region | 100 | |
| 89.14 | | |||
| Zfyve20 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| RBNS5_HUMAN_2 | 10 | 2 | 11 | ASLDDPGEVR | PRIDE |