AutismKB 2.0

Annotation Detail for POPDC3


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Basic Information Top
Gene Symbol:POPDC3 ( MGC22671,POP3,RP11-99L11.2,bA355M14.1 )
Gene Full Name: popeye domain containing 3
Band: 6q21
Quick LinksEntrez ID:64208; OMIM: 605824; Uniprot ID:POPD3_HUMAN; ENSEMBL ID: ENSG00000132429; HGNC ID: 17649
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult10 / 19391215
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal36 / 336030710
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain11 / 11009899
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye3 / 21105414
heart1 / 8962611
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver2 / 2077439
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin10 / 21057447
spleen0 / 539520 
stomach0 / 966190 
testis6 / 33044218
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219926_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.7
Adipocyte5.9
AdrenalCortex6.25
Adrenalgland5.25
Amygdala10.2
Appendix6.75
AtrioventricularNode5.1
BDCA4+_DentriticCells5.9
Bonemarrow5.85
BronchialEpithelialCells7.15
CD105+_Endothelial5.95
CD14+_Monocytes6.2
CD19+_BCells(neg._sel.)6.05
CD33+_Myeloid7.2
CD34+7.05
CD4+_Tcells6.05
CD56+_NKCells6.65
CD71+_EarlyErythroid5.6
CD8+_Tcells5.35
CardiacMyocytes7.5
Caudatenucleus5.35
Cerebellum4.9
CerebellumPeduncles6.8
CiliaryGanglion4.35
CingulateCortex6.35
Colorectaladenocarcinoma5.9
DorsalRootGanglion5.3
FetalThyroid5.8
Fetalbrain5.75
Fetalliver5.3
Fetallung4.8
GlobusPallidus4.65
Heart8.8
Hypothalamus6.65
Kidney5.1
Leukemia_chronicMyelogenousK-56216.25
Leukemia_promyelocytic-HL-605.25
Leukemialymphoblastic(MOLT-4)4.55
Liver8.05
Lung6.45
Lymphnode5
Lymphoma_burkitts(Daudi)7.8
Lymphoma_burkitts(Raji)8.3
MedullaOblongata5.55
OccipitalLobe6.65
OlfactoryBulb9.05
Ovary4
Pancreas4.8
PancreaticIslet6.45
ParietalLobe6.55
Pituitary9.75
Placenta5.85
Pons5.85
PrefrontalCortex8.25
Prostate6.8
Salivarygland4.8
SkeletalMuscle17.6
Skin5.05
SmoothMuscle7
Spinalcord6.35
SubthalamicNucleus6.5
SuperiorCervicalGanglion7.9
TemporalLobe5.55
Testis5.1
TestisGermCell4.8
TestisIntersitial5.5
TestisLeydigCell6.05
TestisSeminiferousTubule5.1
Thalamus6.8
Thymus4.5
Thyroid7.6
Tongue7.15
Tonsil5.8
Trachea4.9
TrigeminalGanglion5.85
Uterus4.75
UterusCorpus5.75
WholeBlood6.4
Wholebrain6.25
colon5.95
pineal_day7.38
pineal_night7.08
retina7.225
small_intestine5.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P358597
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.08 ± 0.56
Basal Forebrain5.35 ± 0.52
Basal Part of Pons5.92 ± 0.45
Cerebellar Cortex5.45 ± 0.55
Cerebellar Nuclei6.74 ± 0.42
Claustrum5.95 ± 0.51
Epithalamus5.31 ± 1.17
Frontal Lobe6.6 ± 0.52
Globus Pallidus6.55 ± 0.71
Hypothalamus5.91 ± 0.64
Insula6.1 ± 0.38
Limbic Lobe6.48 ± 0.79
Mesencephalon6.31 ± 0.75
Myelencephalon6.12 ± 0.67
Occipital Lobe5.69 ± 0.76
Parietal Lobe6.49 ± 0.47
Pontine Tegmentum6.23 ± 0.7
Striatum5.14 ± 1.21
Subthalamus6.94 ± 0.21
Temporal Lobe6.18 ± 0.52
Thalamus5.85 ± 0.41
White Matter7.56 ± 0.2
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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