Annotation Detail for RHBDF1
Basic Information Top
| Gene Symbol: | RHBDF1 ( C16orf8,Dist1,EGFR-RS,FLJ2235,FLJ22357,gene-89,gene-90,hDist1 ) |
|---|---|
| Gene Full Name: | rhomboid 5 homolog 1 (Drosophila) |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:64285; OMIM: NA; Uniprot ID:RHDF1_HUMAN; ENSEMBL ID: ENSG00000007384; HGNC ID: 20561 |
| Relate to Another Database: | SFARIGene; denovo-db |
Unigene EST- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218686_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
 | ||
| 721_B_lymphoblasts | 5.65 |  |
| Adipocyte | 6.75 | |
| AdrenalCortex | 5.5 | |
| Adrenalgland | 4.5 | |
| Amygdala | 5.75 | |
| Appendix | 5.7 | |
| AtrioventricularNode | 4.6 | |
| BDCA4+_DentriticCells | 4.7 | |
| Bonemarrow | 5.3 | |
| BronchialEpithelialCells | 10.1 |  |
| CD105+_Endothelial | 5.4 | |
| CD14+_Monocytes | 5.75 | |
| CD19+_BCells(neg._sel.) | 5.7 | |
| CD33+_Myeloid | 6.05 | |
| CD34+ | 5.9 | |
| CD4+_Tcells | 4.25 | |
| CD56+_NKCells | 5.4 | |
| CD71+_EarlyErythroid | 5 | |
| CD8+_Tcells | 4 | |
| CardiacMyocytes | 9.45 | |
| Caudatenucleus | 4.9 | |
| Cerebellum | 4.35 | |
| CerebellumPeduncles | 6.1 | |
| CiliaryGanglion | 6.85 | |
| CingulateCortex | 5.45 | |
| Colorectaladenocarcinoma | 6.5 | |
| DorsalRootGanglion | 10.15 | |
| FetalThyroid | 9.25 | |
| Fetalbrain | 5.4 | |
| Fetalliver | 4.65 | |
| Fetallung | 13.2 | |
| GlobusPallidus | 3.9 | |
| Heart | 12.2 | |
| Hypothalamus | 5.95 | |
| Kidney | 4.5 | |
| Leukemia_chronicMyelogenousK-562 | 4.9 | |
| Leukemia_promyelocytic-HL-60 | 4.75 | |
| Leukemialymphoblastic(MOLT-4) | 4.2 | |
| Liver | 7.15 | |
| Lung | 22.35 | |
| Lymphnode | 4.7 | |
| Lymphoma_burkitts(Daudi) | 6.9 | |
| Lymphoma_burkitts(Raji) | 7.5 | |
| MedullaOblongata | 5.15 | |
| OccipitalLobe | 4.85 | |
| OlfactoryBulb | 34.2 | |
| Ovary | 4.4 | |
| Pancreas | 11.4 | |
| PancreaticIslet | 7.65 | |
| ParietalLobe | 5.6 | |
| Pituitary | 6.25 | |
| Placenta | 29.2 | |
| Pons | 5.15 | |
| PrefrontalCortex | 6.7 | |
| Prostate | 28.5 | |
| Salivarygland | 4.3 | |
| SkeletalMuscle | 6.4 | |
| Skin | 6.1 | |
| SmoothMuscle | 15.3 | |
| Spinalcord | 8 | |
| SubthalamicNucleus | 4.95 | |
| SuperiorCervicalGanglion | 6.15 | |
| TemporalLobe | 4.9 | |
| Testis | 8.15 | |
| TestisGermCell | 4.5 | |
| TestisIntersitial | 4.65 | |
| TestisLeydigCell | 5.35 | |
| TestisSeminiferousTubule | 4.9 | |
| Thalamus | 5.45 | |
| Thymus | 4.3 | |
| Thyroid | 10.75 | |
| Tongue | 6.65 | |
| Tonsil | 5.35 | |
| Trachea | 4.65 | |
| TrigeminalGanglion | 7.15 | |
| Uterus | 10 | |
| UterusCorpus | 7.85 | |
| WholeBlood | 6 | |
| Wholebrain | 4.65 | |
| colon | 5.5 | |
| pineal_day | 5.92 | |
| pineal_night | 5.94 | |
| retina | 8.625 | |
| small_intestine | 5.3 | |
- Probe name: CUST_11504_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.94 ± 0.98 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.35 ± 0.38 | |
| Basal Part of Pons | 1.29 ± 0.41 | |
| Cerebellar Cortex | 1.5 ± 0.7 | |
| Cerebellar Nuclei | 1.8 ± 0.57 | |
| Claustrum | 2.21 ± 0.83 | |
| Epithalamus | 1.3 ± 0.69 | |
| Frontal Lobe | 1.59 ± 0.65 | |
| Globus Pallidus | 1.91 ± 0.52 | |
| Hypothalamus | 1.49 ± 0.66 | |
| Insula | 1.37 ± 0.78 | |
| Limbic Lobe | 1.61 ± 0.72 | |
| Mesencephalon | 1.89 ± 0.75 | |
| Myelencephalon | 1.72 ± 0.68 | |
| Occipital Lobe | 1.87 ± 0.77 | |
| Parietal Lobe | 1.55 ± 0.72 | |
| Pontine Tegmentum | 1.68 ± 0.63 | |
| Striatum | 1.97 ± 0.64 | |
| Subthalamus | 1.64 ± 0.74 | |
| Temporal Lobe | 1.62 ± 0.69 | |
| Thalamus | 1.84 ± 0.6 | |
| White Matter | 1.51 ± 0.46 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rhbdf1 | CB | Cerebellum | 52.96 |  |
| 52.4 | | |||
| Rhbdf1 | CTX | Cerebral cortex | 52.78 | |
| 51.68 | | |||
| Rhbdf1 | HIP | Hippocampal region | 43.9 | |
| 36.21 | | |||
| Rhbdf1 | HPF | Hippocampal formation | 49.51 | |
| 43.9 | | |||
| Rhbdf1 | HY | Hypothalamus | 35.08 | |
| 24.53 | | |||
| Rhbdf1 | LSX | Lateral septal complex | 23.38 | |
| 14.31 | | |||
| Rhbdf1 | MB | Midbrain | 38.99 | |
| 30.28 | | |||
| Rhbdf1 | MY | Medulla | 52.69 | |
| 51.68 | | |||
| Rhbdf1 | OLF | Olfactory bulb | 46.63 | |
| 44.32 | | |||
| Rhbdf1 | P | Pons | 38.83 | |
| 31.01 | | |||
| Rhbdf1 | PAL | Pallidum | 23.94 | |
| 20.62 | | |||
| Rhbdf1 | RHP | Retrohippocampal region | 52.9 | |
| 51.68 | | |||
| Rhbdf1 | sAMY | Striatum-like amygdalar nuclei | 37.2 | |
| 27.08 | | |||
| Rhbdf1 | STR | Striatum | 30.53 | |
| 20.7 | | |||
| Rhbdf1 | STRd | Striatum dorsal region | 29.2 | |
| 18.94 | | |||
| Rhbdf1 | STRv | Striatum ventral region | 34.53 | |
| 25.49 | | |||
| Rhbdf1 | TH | Thalamus | 50.09 | |
| 50.06 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00042978 | 30 | 167 | 196 | VADDTAEGLSAPHTPVTPGAASLCSFSSSR | Peptide Atlas |