Annotation Detail for RFWD2
Basic Information Top
| Gene Symbol: | RFWD2 ( COP1,FLJ10416,RNF200 ) |
|---|---|
| Gene Full Name: | ring finger and WD repeat domain 2 |
| Band: | 1q25.1-q25.2 |
| Quick Links | Entrez ID:64326; OMIM: 608067; Uniprot ID:RFWD2_HUMAN; ENSEMBL ID: ENSG00000143207; HGNC ID: 17440 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.523744
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 26 / 564012 | 46 | |
| neonate | 1 / 31097 | 32 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 79 / 1939121 | 40 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 |  |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 15 / 263845 | 56 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 6 / 68959 | 87 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 140 / 3360307 | 41 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 9 / 125191 | 71 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 3 / 29757 | 100 | |
| blood | 5 / 123478 | 40 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 21 / 1100989 | 19 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 6 / 89626 | 66 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 9 / 207743 | 43 | |
| lung | 13 / 336974 | 38 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 26 / 210574 | 123 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 12 / 96619 | 124 | |
| testis | 19 / 330442 | 57 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 15 / 232878 | 64 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P396194
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.87 ± 0.45 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.79 ± 0.13 | |
| Basal Part of Pons | 8.06 ± 0.21 | |
| Cerebellar Cortex | 8.19 ± 0.16 | |
| Cerebellar Nuclei | 7.87 ± 0.15 | |
| Claustrum | 8 ± 0.26 | |
| Epithalamus | 8.17 ± 0.3 | |
| Frontal Lobe | 8.11 ± 0.27 | |
| Globus Pallidus | 7.41 ± 0.15 | |
| Hypothalamus | 8.14 ± 0.25 | |
| Insula | 8.22 ± 0.18 | |
| Limbic Lobe | 8.08 ± 0.41 | |
| Mesencephalon | 7.89 ± 0.32 | |
| Myelencephalon | 7.96 ± 0.35 | |
| Occipital Lobe | 7.74 ± 0.41 | |
| Parietal Lobe | 8 ± 0.31 | |
| Pontine Tegmentum | 8.04 ± 0.31 | |
| Striatum | 7.68 ± 0.39 | |
| Subthalamus | 8.07 ± 0.37 | |
| Temporal Lobe | 8.18 ± 0.3 | |
| Thalamus | 7.8 ± 0.24 | |
| White Matter | 7.42 ± 0.22 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rfwd2 | CB | Cerebellum | 0.91 | |
| 1.32 | | |||
| Rfwd2 | CTX | Cerebral cortex | 1.03 | |
| 0.8 | | |||
| Rfwd2 | HIP | Hippocampal region | 0.57 | |
| 0.6 | | |||
| Rfwd2 | HPF | Hippocampal formation | 0.56 | |
| 0.67 | | |||
| Rfwd2 | HY | Hypothalamus | 0.22 | |
| 0.2 | | |||
| Rfwd2 | LSX | Lateral septal complex | 0.36 | |
| 0.32 | | |||
| Rfwd2 | MB | Midbrain | 0.94 | |
| 1.18 | | |||
| Rfwd2 | MY | Medulla | 0.75 | |
| 0.78 | | |||
| Rfwd2 | OLF | Olfactory bulb | 1.12 | |
| 0.85 | | |||
| Rfwd2 | P | Pons | 0.69 | |
| 0.68 | | |||
| Rfwd2 | PAL | Pallidum | 0.82 | |
| 0.85 | | |||
| Rfwd2 | RHP | Retrohippocampal region | 0.51 | |
| 0.78 | | |||
| Rfwd2 | sAMY | Striatum-like amygdalar nuclei | 0.41 | |
| 0.37 | | |||
| Rfwd2 | STR | Striatum | 0.42 | |
| 0.34 | | |||
| Rfwd2 | STRd | Striatum dorsal region | 0.44 | |
| 0.36 | | |||
| Rfwd2 | STRv | Striatum ventral region | 0.46 | |
| 0.33 | | |||
| Rfwd2 | TH | Thalamus | 0.4 | |
| 0.34 | |