AutismKB 2.0

Annotation Detail for ZMAT3


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Basic Information Top
Gene Symbol:ZMAT3 ( FLJ12296,FLJ31683,MGC10613,PAG608,WIG-1,WIG1 )
Gene Full Name: zinc finger, matrin-type 3
Band: 3q26.32
Quick LinksEntrez ID:64393; OMIM: 606452; Uniprot ID:ZMAT3_HUMAN; ENSEMBL ID: ENSG00000172667; HGNC ID: 29983
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst1 / 6231916
fetus20 / 56401235
neonate2 / 3109764
infant0 / 236200 
juvenile1 / 5555617
adult93 / 193912147
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma11 / 82823132
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor8 / 11936967
germ cell tumor13 / 26384549
glioma13 / 106883121
head and neck tumor4 / 13630229
kidney tumor6 / 6895987
leukemia2 / 9584220
liver tumor3 / 9635931
lung tumor1 / 1031279
lymphoma4 / 7175555
non-neoplasia5 / 9725051
normal145 / 336030743
ovarian tumor5 / 7668265
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS13 / 125680103
prostate cancer1 / 1026809
retinoblastoma3 / 4635664
skin tumor12 / 12494996
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites0 / 400150 
bladder2 / 2975767
blood3 / 12347824
bone6 / 7165583
bone marrow4 / 4880181
brain50 / 110098945
cervix1 / 4817120
connective tissue15 / 149255100
ear0 / 162120 
embryonic tissue11 / 21572250
esophagus0 / 202090 
eye8 / 21105437
heart7 / 8962678
intestine5 / 23447221
kidney11 / 21177751
larynx2 / 2414582
liver3 / 20774314
lung16 / 33697447
lymph4 / 4427090
lymph node7 / 9161076
mammary gland12 / 15327178
mouth4 / 6705259
muscle1 / 1077159
nerve2 / 15768126
ovary5 / 10205148
pancreas5 / 21481223
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta4 / 28082514
prostate1 / 1893455
salivary gland0 / 201550 
skin29 / 210574137
spleen0 / 539520 
stomach9 / 9661993
testis3 / 3304429
thymus4 / 8113149
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus8 / 23287834
vascular6 / 51780115
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219628_at
Cell line Expression level Expression bar
721_B_lymphoblasts19
Adipocyte37.7
AdrenalCortex9.4
Adrenalgland12
Amygdala38.75
Appendix17.5
AtrioventricularNode8.75
BDCA4+_DentriticCells11.1
Bonemarrow9.65
BronchialEpithelialCells12.7
CD105+_Endothelial6.95
CD14+_Monocytes10.35
CD19+_BCells(neg._sel.)9.45
CD33+_Myeloid10.85
CD34+9.7
CD4+_Tcells21.85
CD56+_NKCells13.05
CD71+_EarlyErythroid6.8
CD8+_Tcells11.1
CardiacMyocytes45.35
Caudatenucleus9.9
Cerebellum10.35
CerebellumPeduncles19.2
CiliaryGanglion10
CingulateCortex19
Colorectaladenocarcinoma10.05
DorsalRootGanglion13.15
FetalThyroid7.6
Fetalbrain10.4
Fetalliver10.45
Fetallung8.4
GlobusPallidus14.7
Heart13.2
Hypothalamus13.4
Kidney9.85
Leukemia_chronicMyelogenousK-5627.15
Leukemia_promyelocytic-HL-6012.2
Leukemialymphoblastic(MOLT-4)7.6
Liver17.05
Lung12.85
Lymphnode9.55
Lymphoma_burkitts(Daudi)15.9
Lymphoma_burkitts(Raji)17.15
MedullaOblongata30.5
OccipitalLobe24.7
OlfactoryBulb21
Ovary6.1
Pancreas12.75
PancreaticIslet12.8
ParietalLobe21.95
Pituitary18.1
Placenta12.95
Pons17.05
PrefrontalCortex35.85
Prostate13
Salivarygland8.8
SkeletalMuscle17.85
Skin11.15
SmoothMuscle54.7
Spinalcord10.9
SubthalamicNucleus12.45
SuperiorCervicalGanglion27.95
TemporalLobe20.95
Testis8.55
TestisGermCell6.55
TestisIntersitial7.7
TestisLeydigCell14
TestisSeminiferousTubule9.4
Thalamus11.85
Thymus13.65
Thyroid13
Tongue13.3
Tonsil9.85
Trachea7.8
TrigeminalGanglion13.95
Uterus10.45
UterusCorpus12.65
WholeBlood12.5
Wholebrain47.4
colon11.6
pineal_day22.5
pineal_night19.56
retina17.85
small_intestine10
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15028_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.4 ± 0.58
Basal Forebrain5.84 ± 0.29
Basal Part of Pons6.13 ± 0.51
Cerebellar Cortex5.42 ± 0.39
Cerebellar Nuclei5.88 ± 0.45
Claustrum6.88 ± 0.5
Epithalamus5.06 ± 0.7
Frontal Lobe5.82 ± 0.55
Globus Pallidus6.41 ± 0.24
Hypothalamus5.69 ± 0.56
Insula5.92 ± 0.49
Limbic Lobe6.25 ± 0.53
Mesencephalon6.05 ± 0.55
Myelencephalon5.99 ± 0.56
Occipital Lobe6.43 ± 0.58
Parietal Lobe6.13 ± 0.59
Pontine Tegmentum5.96 ± 0.4
Striatum6.28 ± 0.51
Subthalamus5.81 ± 0.43
Temporal Lobe5.86 ± 0.52
Thalamus5.96 ± 0.44
White Matter5.38 ± 0.5
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zmat3CBCerebellum21.91
52.3
Zmat3CTXCerebral cortex22.89
18.55
Zmat3HIPHippocampal region16.18
17.6
Zmat3HPFHippocampal formation16.6
16
Zmat3HYHypothalamus1.71
1.62
Zmat3LSXLateral septal complex4.08
3.08
Zmat3MBMidbrain12.99
14.22
Zmat3MYMedulla23.59
30.88
Zmat3OLFOlfactory bulb9.69
7.95
Zmat3PPons20.58
26.49
Zmat3PALPallidum1.98
1.87
Zmat3RHPRetrohippocampal region17.62
14.24
Zmat3sAMYStriatum-like amygdalar nuclei0.83
0.53
Zmat3STRStriatum3.78
2.93
Zmat3STRdStriatum dorsal region4.75
3.74
Zmat3STRvStriatum ventral region1.88
1.52
Zmat3THThalamus3.36
3.04
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010688 19 74 92 LCNVTLNSAQQAQAHYQGK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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