Annotation Detail for WBSCR17
Basic Information Top
| Gene Symbol: | WBSCR17 ( DKFZp434I2216,DKFZp761D2324,GALNT16,GALNT20,GALNTL3 ) |
|---|---|
| Gene Full Name: | Williams-Beuren syndrome chromosome region 17 |
| Band: | 7q11.23 |
| Quick Links | Entrez ID:64409; OMIM: NA; Uniprot ID:GLTL3_HUMAN; ENSEMBL ID: ENSG00000185274; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.488591
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 4 / 62319 | 64 |  |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 25 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 |  |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 87 / 3360307 | 25 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 74 / 1100989 | 67 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 15 / 336974 | 44 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 3 / 330442 | 9 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_14031_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.47 ± 0.63 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.11 ± 0.23 | |
| Basal Part of Pons | 7.76 ± 0.45 | |
| Cerebellar Cortex | 7.98 ± 0.33 | |
| Cerebellar Nuclei | 7.05 ± 0.5 | |
| Claustrum | 7.87 ± 0.59 | |
| Epithalamus | 6.7 ± 0.78 | |
| Frontal Lobe | 7.8 ± 0.55 | |
| Globus Pallidus | 5.35 ± 0.79 | |
| Hypothalamus | 6.97 ± 0.62 | |
| Insula | 7.95 ± 0.38 | |
| Limbic Lobe | 8.57 ± 0.65 | |
| Mesencephalon | 7.22 ± 0.6 | |
| Myelencephalon | 7.74 ± 0.62 | |
| Occipital Lobe | 8.35 ± 0.76 | |
| Parietal Lobe | 7.9 ± 0.59 | |
| Pontine Tegmentum | 7.78 ± 0.73 | |
| Striatum | 7.51 ± 0.64 | |
| Subthalamus | 6.72 ± 0.37 | |
| Temporal Lobe | 7.94 ± 0.4 | |
| Thalamus | 7.89 ± 0.45 | |
| White Matter | 5.02 ± 0.66 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Wbscr17 | CB | Cerebellum | 91.7 | |
| 78.37 | | |||
| Wbscr17 | CTX | Cerebral cortex | 81.93 | |
| 58.8 | | |||
| Wbscr17 | HIP | Hippocampal region | 98.64 | |
| 100 | | |||
| Wbscr17 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Wbscr17 | HY | Hypothalamus | 66.44 | |
| 42.95 | | |||
| Wbscr17 | LSX | Lateral septal complex | 80.58 | |
| 61.85 | | |||
| Wbscr17 | MB | Midbrain | 57.38 | |
| 43.41 | | |||
| Wbscr17 | MY | Medulla | 82.57 | |
| 67.8 | | |||
| Wbscr17 | OLF | Olfactory bulb | 78.68 | |
| 55.4 | | |||
| Wbscr17 | P | Pons | 61.74 | |
| 49.48 | | |||
| Wbscr17 | PAL | Pallidum | 45.96 | |
| 33.01 | | |||
| Wbscr17 | RHP | Retrohippocampal region | 93.65 | |
| 80.82 | | |||
| Wbscr17 | sAMY | Striatum-like amygdalar nuclei | 57.6 | |
| 33.87 | | |||
| Wbscr17 | STR | Striatum | 63.82 | |
| 38.02 | | |||
| Wbscr17 | STRd | Striatum dorsal region | 67.1 | |
| 40.87 | | |||
| Wbscr17 | STRv | Striatum ventral region | 47.4 | |
| 24.53 | | |||
| Wbscr17 | TH | Thalamus | 100 | |
| 100 | |