AutismKB 2.0

Annotation Detail for CLEC7A


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Basic Information Top
Gene Symbol:CLEC7A ( BGR,CANDF4,CLECSF12,DECTIN1 )
Gene Full Name: C-type lectin domain family 7, member A
Band: 12p13.2
Quick LinksEntrez ID:64581; OMIM: 606264; Uniprot ID:CLC7A_HUMAN; ENSEMBL ID: ENSG00000172243; HGNC ID: 14558
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate4 / 31097128
infant0 / 236200 
juvenile0 / 555560 
adult23 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal76 / 336030722
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood37 / 123478299
bone0 / 716550 
bone marrow2 / 4880140
brain20 / 110098918
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine2 / 2344728
kidney0 / 2117770 
larynx2 / 2414582
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta5 / 28082517
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen8 / 53952148
stomach0 / 966190 
testis0 / 3304420 
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221698_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.15
Adipocyte9.05
AdrenalCortex10.4
Adrenalgland7.8
Amygdala13.45
Appendix16
AtrioventricularNode13.15
BDCA4+_DentriticCells216.45
Bonemarrow13.05
BronchialEpithelialCells8.6
CD105+_Endothelial29.4
CD14+_Monocytes933.45
CD19+_BCells(neg._sel.)9.55
CD33+_Myeloid1267.4
CD34+9.5
CD4+_Tcells9.65
CD56+_NKCells72.4
CD71+_EarlyErythroid8.8
CD8+_Tcells7.9
CardiacMyocytes14.15
Caudatenucleus8.35
Cerebellum7.7
CerebellumPeduncles11.75
CiliaryGanglion14.5
CingulateCortex9.4
Colorectaladenocarcinoma9
DorsalRootGanglion9.85
FetalThyroid7.7
Fetalbrain7.1
Fetalliver8.7
Fetallung7.55
GlobusPallidus7.15
Heart13.15
Hypothalamus12.15
Kidney7.95
Leukemia_chronicMyelogenousK-5627.15
Leukemia_promyelocytic-HL-6011.5
Leukemialymphoblastic(MOLT-4)7.3
Liver12.4
Lung41.8
Lymphnode8.85
Lymphoma_burkitts(Daudi)11.55
Lymphoma_burkitts(Raji)19.15
MedullaOblongata11.65
OccipitalLobe8.35
OlfactoryBulb7.5
Ovary8.35
Pancreas7.4
PancreaticIslet10.75
ParietalLobe10.35
Pituitary9.75
Placenta16.6
Pons10.7
PrefrontalCortex10.65
Prostate10.8
Salivarygland12.2
SkeletalMuscle12.1
Skin9.05
SmoothMuscle10.6
Spinalcord19.05
SubthalamicNucleus8.3
SuperiorCervicalGanglion76.6
TemporalLobe8.6
Testis7.3
TestisGermCell7.1
TestisIntersitial7.8
TestisLeydigCell9.55
TestisSeminiferousTubule8.15
Thalamus10.05
Thymus7.15
Thyroid10
Tongue9.7
Tonsil13.05
Trachea7.85
TrigeminalGanglion19.2
Uterus7.5
UterusCorpus11.75
WholeBlood985.7
Wholebrain6.35
colon10.9
pineal_day15.68
pineal_night11.5
retina16.45
small_intestine14.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P227415
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.77 ± 1.24
Basal Forebrain2.77 ± 0.46
Basal Part of Pons3.11 ± 0.83
Cerebellar Cortex2.87 ± 0.81
Cerebellar Nuclei3.58 ± 0.7
Claustrum3.53 ± 0.97
Epithalamus3.92 ± 1.28
Frontal Lobe3.05 ± 0.97
Globus Pallidus4.24 ± 0.87
Hypothalamus3.25 ± 0.87
Insula2.72 ± 1
Limbic Lobe3 ± 0.84
Mesencephalon3.18 ± 0.73
Myelencephalon3.1 ± 0.85
Occipital Lobe3.04 ± 0.76
Parietal Lobe2.99 ± 0.89
Pontine Tegmentum3.11 ± 0.95
Striatum3.26 ± 0.76
Subthalamus2.82 ± 0.54
Temporal Lobe2.95 ± 0.81
Thalamus2.96 ± 0.62
White Matter4 ± 0.27
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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