Annotation Detail for GIGYF1
Basic Information Top
| Gene Symbol: | GIGYF1 ( GYF1,PERQ1 ) |
|---|---|
| Gene Full Name: | GRB10 interacting GYF protein 1 |
| Band: | 7q22.1 |
| Quick Links | Entrez ID:64599; OMIM: 612064; Uniprot ID:PERQ1_HUMAN; ENSEMBL ID: ENSG00000146830; HGNC ID: 9126 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.414396
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 16 / 564012 | 28 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 74 / 1939121 | 38 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 89 / 3360307 | 26 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 18 / 1100989 | 16 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 11 / 211054 | 52 | |
| heart | 2 / 89626 | 22 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 1 / 24145 | 41 | |
| liver | 0 / 207743 | 0 | |
| lung | 20 / 336974 | 59 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 3 / 330442 | 9 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P231173
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.58 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.37 ± 0.28 | |
| Basal Part of Pons | 5.48 ± 0.64 | |
| Cerebellar Cortex | 5.73 ± 0.46 | |
| Cerebellar Nuclei | 5.3 ± 0.39 | |
| Claustrum | 5.52 ± 0.66 | |
| Epithalamus | 5.13 ± 0.87 | |
| Frontal Lobe | 5.2 ± 0.49 | |
| Globus Pallidus | 5.35 ± 0.57 | |
| Hypothalamus | 5.28 ± 0.46 | |
| Insula | 5.11 ± 0.65 | |
| Limbic Lobe | 5.33 ± 0.53 | |
| Mesencephalon | 5.3 ± 0.54 | |
| Myelencephalon | 5.35 ± 0.54 | |
| Occipital Lobe | 5.5 ± 0.42 | |
| Parietal Lobe | 5.25 ± 0.46 | |
| Pontine Tegmentum | 5.05 ± 0.47 | |
| Striatum | 5.22 ± 0.54 | |
| Subthalamus | 5.42 ± 0.62 | |
| Temporal Lobe | 5.24 ± 0.47 | |
| Thalamus | 5.27 ± 0.52 | |
| White Matter | 5.78 ± 0.32 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Perq1 | CB | Cerebellum | 19.17 | |
| 17.77 | | |||
| Perq1 | CTX | Cerebral cortex | 60.85 | |
| 39.43 | | |||
| Perq1 | HIP | Hippocampal region | 46.19 | |
| 47.43 | | |||
| Perq1 | HPF | Hippocampal formation | 51.08 | |
| 45.5 | | |||
| Perq1 | HY | Hypothalamus | 28.48 | |
| 18.48 | | |||
| Perq1 | LSX | Lateral septal complex | 20.25 | |
| 12.03 | | |||
| Perq1 | MB | Midbrain | 35.96 | |
| 26.07 | | |||
| Perq1 | MY | Medulla | 38.55 | |
| 29.51 | | |||
| Perq1 | OLF | Olfactory bulb | 58.12 | |
| 43.15 | | |||
| Perq1 | P | Pons | 31.24 | |
| 23.03 | | |||
| Perq1 | PAL | Pallidum | 24.93 | |
| 17.27 | | |||
| Perq1 | RHP | Retrohippocampal region | 59.05 | |
| 42.32 | | |||
| Perq1 | sAMY | Striatum-like amygdalar nuclei | 33.26 | |
| 20.34 | | |||
| Perq1 | STR | Striatum | 25.79 | |
| 16.21 | | |||
| Perq1 | STRd | Striatum dorsal region | 25.18 | |
| 16.26 | | |||
| Perq1 | STRv | Striatum ventral region | 26.12 | |
| 15.68 | | |||
| Perq1 | TH | Thalamus | 35.77 | |
| 23.54 | |