AutismKB 2.0

Annotation Detail for SH2D7


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Basic Information Top
Gene Symbol:SH2D7 ( - )
Gene Full Name: SH2 domain containing 7
Band: 15q25.1
Quick LinksEntrez ID:646892; OMIM: NA; Uniprot ID:SH2D7_HUMAN; ENSEMBL ID: ENSG00000183476; HGNC ID: 34549
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult0 / 19391210 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal0 / 33603070 
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta4 / 28082514
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: Primary tumors (U95A)
  • Affymatrix Probe ID: 39904_at
Cell line Expression level Expression bar
Pr1T2.923
Pr4T3.402
Pr5T3.142
Pr7T3.323
Pr1N3.331
Pr5N3.27
Pr6T3.833
Pr3N3.254
Pr3T3.372
Pr4N3.193
Pr2N3.107
Pr8N3.314
Pr8T3.512
Pr9N3.264
Pr10N3.332
Pr10T3.456
Pr9T3.197
Pr11T3.305
Pr12T3.243
Pr13AT3.433
Pr13BT3.371
Pr21T3.402
Pr22T3.38
Pr30T3.729
Pr23T3.653
Pr19T3.483
Pr26T3.415
Pr31T3.451
Pr16T3.454
Pr17T3.438
Pr24T3.278
Pr27T3.196
Pr29T3.085
OVR1023.37
HUOVR3.23
G23.747
G33.584
G53.376
G63.472
G83.263
G93.398
CO7T3.693
CO8T3.252
CO15T3.744
CO27T3.63
CO30T3.769
CO32T3.475
CO40T3.425
CO52N4.057
CO62N3.749
K13.234
K23.31
K33.064
K43.392
K14N4.037
K163.5
K173.933
K193.469
K203.453
K223.459
CO9T3.416
CO20T3.767
CO24T3.712
CO36N3.831
K183.34
P1N3.253
P2N3.6
P5N3.708
P83.386
P112.926
P173.558
K213.617
K25N3.827
K28N4.343
CO42T3.613
P223.185
P13N3.366
LU11T3.461
LU16T3.61
LU7T3.342
LU8T3.302
LU12T3.482
LU13T3.525
LU5T3.69
LU6T3.933
LU14T3.573
LU17T3.646
LU50N3.199
LU52N3.597
LU18T3.478
LU55N3.48
LU3N3.745
P16B3.901
P233.211
OVR163.322
OVR193.244
OVR273.35
OVR283.244
OVR278E3.534
OVR23.365
OVR53.232
OVR83.56
OVR113.51
OVR123.492
OVR133.351
OVR223.565
OVR263.553
OVR103.94
OVR278S3.81
OVR13.379
LU19T3.436
LU20T3.475
LU24T3.497
LU25T3.515
LU31T3.915
LU34T3.801
LU39T3.125
CO14T3.643
CO21T3.953
CO23T3.612
CO41N3.339
LU40T3.766
LU41T3.226
LU44T3.566
LU46T3.514
LU49T3.509
L5N3.647
LU42T3.544
LU30T3.593
LU43T3.975
CO5T3.632
CO44T3.307
CO49T3.562
CO51T3.605
CO56T3.381
CO61T3.363
LU26T3.626
LU33T3.899
LU36T3.374
CO43T3.692
G183.782
G463.445
L11T3.89
L13N3.733
L30T3.837
L31T3.736
L32T3.956
L34T3.936
L35T4.034
B1N3.881
B5N3.454
B8T3.521
B10T3.478
B14T3.881
B16T3.489
B17T3.551
B1NR3.744
B20T3.956
B51NR3.684
B6T4.163
B15T4.154
B21T4.577
B29T3.613
B31T3.915
B32T4.03
B24T3.45
B46T3.394
B34T3.646
B36T3.554
B37T3.734
B38T3.573
B39T3.3
X1023.533
X116_023.616
G2803.332
X463.384
X583.353
G1863.726
G2963.518
L38T3.538
L31T.23.42
L26N3.723
N257ANTR3.566
N285BODY3.489
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_782_PI416573500
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.35 ± 1.02
Basal Forebrain1.69 ± 0.31
Basal Part of Pons1.77 ± 0.89
Cerebellar Cortex1.81 ± 0.98
Cerebellar Nuclei2.11 ± 1.02
Claustrum2.72 ± 0.96
Epithalamus1.48 ± 1.15
Frontal Lobe1.73 ± 0.86
Globus Pallidus2.59 ± 0.76
Hypothalamus1.94 ± 0.84
Insula1.8 ± 0.87
Limbic Lobe2.02 ± 1.02
Mesencephalon2.09 ± 0.91
Myelencephalon1.93 ± 0.87
Occipital Lobe1.94 ± 0.85
Parietal Lobe2.01 ± 1.18
Pontine Tegmentum2.06 ± 0.99
Striatum2.06 ± 0.88
Subthalamus2.56 ± 0.43
Temporal Lobe1.84 ± 1.01
Thalamus1.85 ± 0.76
White Matter2.21 ± 0.85
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
4933412E14RikCBCerebellum7.35
8.54
4933412E14RikCTXCerebral cortex2.39
3.54
4933412E14RikHIPHippocampal region2.36
2.64
4933412E14RikHPFHippocampal formation1.93
1.97
4933412E14RikHYHypothalamus4.16
3.33
4933412E14RikLSXLateral septal complex7.2
5.99
4933412E14RikMBMidbrain5.22
5.72
4933412E14RikMYMedulla4.31
4.97
4933412E14RikOLFOlfactory bulb7.57
8.23
4933412E14RikPPons6.1
6.25
4933412E14RikPALPallidum2.7
2.65
4933412E14RikRHPRetrohippocampal region1.11
0.98
4933412E14RiksAMYStriatum-like amygdalar nuclei0.57
0.53
4933412E14RikSTRStriatum0.94
0.78
4933412E14RikSTRdStriatum dorsal region0.48
0.45
4933412E14RikSTRvStriatum ventral region0.55
0.32
4933412E14RikTHThalamus2.69
2.01
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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