AutismKB 2.0

Annotation Detail for WDR13


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Basic Information Top
Gene Symbol:WDR13 ( DKFZp779C2057,FLJ20563,MG21 )
Gene Full Name: WD repeat domain 13
Band: Xp11.23
Quick LinksEntrez ID:64743; OMIM: 300512; Uniprot ID:WDR13_HUMAN; ENSEMBL ID: ENSG00000101940; HGNC ID: 14352
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst2 / 6231932
fetus47 / 56401283
neonate0 / 310970 
infant2 / 2362084
juvenile1 / 5555617
adult208 / 1939121107
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor5 / 9417853
cervical tumor5 / 34366145
chondrosarcoma5 / 8282360
colorectal tumor10 / 11424687
esophageal tumor0 / 172900 
gastrointestinal tumor50 / 119369418
germ cell tumor8 / 26384530
glioma16 / 106883149
head and neck tumor16 / 136302117
kidney tumor10 / 68959145
leukemia3 / 9584231
liver tumor1 / 9635910
lung tumor17 / 103127164
lymphoma7 / 7175597
non-neoplasia5 / 9725051
normal225 / 336030766
ovarian tumor3 / 7668239
pancreatic tumor12 / 104616114
primitive neuroectodermal tumor of the CNS19 / 125680151
prostate cancer7 / 10268068
retinoblastoma3 / 4635664
skin tumor8 / 12494964
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor8 / 9025788
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites39 / 40015974
bladder0 / 297570 
blood6 / 12347848
bone7 / 7165597
bone marrow2 / 4880140
brain87 / 110098979
cervix13 / 48171269
connective tissue9 / 14925560
ear0 / 162120 
embryonic tissue11 / 21572250
esophagus0 / 202090 
eye20 / 21105494
heart4 / 8962644
intestine20 / 23447285
kidney23 / 211777108
larynx2 / 2414582
liver11 / 20774352
lung32 / 33697494
lymph2 / 4427045
lymph node2 / 9161021
mammary gland5 / 15327132
mouth1 / 6705214
muscle8 / 10771574
nerve1 / 1576863
ovary6 / 10205158
pancreas18 / 21481283
parathyroid1 / 2053948
pharynx2 / 4132848
pituitary gland2 / 16585120
placenta28 / 28082599
prostate16 / 18934584
salivary gland11 / 20155545
skin13 / 21057461
spleen4 / 5395274
stomach11 / 96619113
testis3 / 3304429
thymus2 / 8113124
thyroid1 / 4747321
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus12 / 23287851
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 222138_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts78.2
Adipocyte22.65
AdrenalCortex49.4
Adrenalgland42.9
Amygdala103.85
Appendix14
AtrioventricularNode8.25
BDCA4+_DentriticCells55.9
Bonemarrow9.75
BronchialEpithelialCells53.3
CD105+_Endothelial63.95
CD14+_Monocytes134.4
CD19+_BCells(neg._sel.)86.85
CD33+_Myeloid90
CD34+63
CD4+_Tcells37.9
CD56+_NKCells66.2
CD71+_EarlyErythroid235.7
CD8+_Tcells44.05
CardiacMyocytes21.2
Caudatenucleus37.45
Cerebellum17.25
CerebellumPeduncles26.6
CiliaryGanglion11.2
CingulateCortex24.85
Colorectaladenocarcinoma142.95
DorsalRootGanglion23.65
FetalThyroid110.65
Fetalbrain42.35
Fetalliver12.65
Fetallung71
GlobusPallidus16.8
Heart377.25
Hypothalamus55.5
Kidney31.65
Leukemia_chronicMyelogenousK-56215.05
Leukemia_promyelocytic-HL-6015.85
Leukemialymphoblastic(MOLT-4)14.95
Liver62.1
Lung211.15
Lymphnode25.9
Lymphoma_burkitts(Daudi)35.65
Lymphoma_burkitts(Raji)115.85
MedullaOblongata37.3
OccipitalLobe29.3
OlfactoryBulb45.55
Ovary14.9
Pancreas38.5
PancreaticIslet110.85
ParietalLobe25.8
Pituitary41.25
Placenta99.7
Pons21.95
PrefrontalCortex71.15
Prostate138.15
Salivarygland9.15
SkeletalMuscle25.05
Skin13.15
SmoothMuscle33.6
Spinalcord39.6
SubthalamicNucleus20.9
SuperiorCervicalGanglion13.3
TemporalLobe56.95
Testis18.05
TestisGermCell14
TestisIntersitial12.35
TestisLeydigCell14.2
TestisSeminiferousTubule12.2
Thalamus34.7
Thymus26.55
Thyroid238.65
Tongue19.3
Tonsil13.35
Trachea14.85
TrigeminalGanglion11.6
Uterus141.75
UterusCorpus18.9
WholeBlood24.75
Wholebrain128.7
colon22.9
pineal_day154.86
pineal_night141.96
retina109.475
small_intestine21.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P136916
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.35 ± 0.6
Basal Forebrain8.27 ± 0.15
Basal Part of Pons8.43 ± 0.39
Cerebellar Cortex8.09 ± 0.29
Cerebellar Nuclei8.11 ± 0.33
Claustrum8.07 ± 0.52
Epithalamus8.69 ± 0.51
Frontal Lobe8.49 ± 0.38
Globus Pallidus7.99 ± 0.38
Hypothalamus8.28 ± 0.31
Insula8.58 ± 0.3
Limbic Lobe8.38 ± 0.49
Mesencephalon8.2 ± 0.34
Myelencephalon8.38 ± 0.38
Occipital Lobe8 ± 0.4
Parietal Lobe8.31 ± 0.36
Pontine Tegmentum8.27 ± 0.4
Striatum8.48 ± 0.42
Subthalamus8.29 ± 0.14
Temporal Lobe8.59 ± 0.36
Thalamus8.25 ± 0.29
White Matter8.16 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Wdr13CBCerebellum10.88
10.51
Wdr13CTXCerebral cortex54.75
41.38
Wdr13HIPHippocampal region47.67
70.82
Wdr13HPFHippocampal formation51.16
61.74
Wdr13HYHypothalamus3.89
3.11
Wdr13LSXLateral septal complex20.47
15.4
Wdr13MBMidbrain6.77
6.72
Wdr13MYMedulla7.99
9.34
Wdr13OLFOlfactory bulb54.36
45.19
Wdr13PPons6.83
7.82
Wdr13PALPallidum6.05
5.08
Wdr13RHPRetrohippocampal region55.94
48.57
Wdr13sAMYStriatum-like amygdalar nuclei24.12
16.48
Wdr13STRStriatum30.55
21.44
Wdr13STRdStriatum dorsal region30.5
21.15
Wdr13STRvStriatum ventral region37.96
26.57
Wdr13THThalamus4.72
3.75
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00161951 12 398 409 SFPIEQSSHPVR Peptide Atlas
WDR13_HUMAN_93 9 93 101 MEDFEDDPR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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