Annotation Detail for SMAP2
Basic Information Top
| Gene Symbol: | SMAP2 ( RP1-228H13.3,SMAP1L ) |
|---|---|
| Gene Full Name: | small ArfGAP2 |
| Band: | 1p34.2 |
| Quick Links | Entrez ID:64744; OMIM: NA; Uniprot ID:SMAP2_HUMAN; ENSEMBL ID: ENSG00000084070; HGNC ID: 25082 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.15200
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 19 / 564012 | 33 |  |
| neonate | 3 / 31097 | 96 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 96 / 1939121 | 49 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 2 / 263845 | 7 |  |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 10 / 95842 | 104 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 10 / 103127 | 96 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 152 / 3360307 | 45 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 7 / 102680 | 68 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 33 / 123478 | 267 |  |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 53 / 1100989 | 48 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 1 / 89626 | 11 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 2 / 24145 | 82 | |
| liver | 5 / 207743 | 24 | |
| lung | 22 / 336974 | 65 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 6 / 53952 | 111 | |
| stomach | 1 / 96619 | 10 | |
| testis | 11 / 330442 | 33 | |
| thymus | 12 / 81131 | 147 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 6 / 16999 | 352 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P225325
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.62 ± 0.28 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.34 ± 0.3 | |
| Basal Part of Pons | 5.77 ± 0.53 | |
| Cerebellar Cortex | 5.37 ± 0.34 | |
| Cerebellar Nuclei | 5.81 ± 0.29 | |
| Claustrum | 5.93 ± 0.45 | |
| Epithalamus | 4.89 ± 0.42 | |
| Frontal Lobe | 5.84 ± 0.47 | |
| Globus Pallidus | 4.61 ± 0.54 | |
| Hypothalamus | 5.92 ± 0.22 | |
| Insula | 5.96 ± 0.37 | |
| Limbic Lobe | 5.81 ± 0.52 | |
| Mesencephalon | 5.57 ± 0.61 | |
| Myelencephalon | 5.54 ± 0.6 | |
| Occipital Lobe | 5.15 ± 0.58 | |
| Parietal Lobe | 5.77 ± 0.43 | |
| Pontine Tegmentum | 5.62 ± 0.45 | |
| Striatum | 5.02 ± 0.75 | |
| Subthalamus | 5.93 ± 0.25 | |
| Temporal Lobe | 5.9 ± 0.35 | |
| Thalamus | 5.15 ± 0.46 | |
| White Matter | 4.63 ± 0.44 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Smap1l | CB | Cerebellum | 84.07 | |
| 100 | | |||
| Smap1l | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Smap1l | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Smap1l | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Smap1l | HY | Hypothalamus | 100 | |
| 100 | | |||
| Smap1l | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Smap1l | MB | Midbrain | 100 | |
| 100 | | |||
| Smap1l | MY | Medulla | 97.42 | |
| 100 | | |||
| Smap1l | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Smap1l | P | Pons | 100 | |
| 100 | | |||
| Smap1l | PAL | Pallidum | 100 | |
| 100 | | |||
| Smap1l | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Smap1l | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Smap1l | STR | Striatum | 100 | |
| 100 | | |||
| Smap1l | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Smap1l | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Smap1l | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00011564 | 23 | 180 | 202 | STAPVMDLLGLDAPVACSIANSK | Peptide Atlas |
| SMAP2_HUMAN_2 | 10 | 2 | 11 | TGKSVKDVDR | PRIDE |