Annotation Detail for CCDC136
Basic Information Top
| Gene Symbol: | CCDC136 ( DKFZp434G156,MGC129657,MGC176632 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 136 |
| Band: | 7q32.1 |
| Quick Links | Entrez ID:64753; OMIM: 611902; Uniprot ID:CC136_HUMAN; ENSEMBL ID: ENSG00000128596; HGNC ID: 22225 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.521178
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 26 / 564012 | 46 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 1 / 55556 | 17 | |
| adult | 53 / 1939121 | 27 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 127 / 3360307 | 37 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 54 / 1100989 | 49 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 20 / 211054 | 94 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 56 / 330442 | 169 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_6302_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.69 ± 0.74 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.15 ± 0.73 | |
| Basal Part of Pons | 3.59 ± 0.63 | |
| Cerebellar Cortex | 4.28 ± 0.29 | |
| Cerebellar Nuclei | 3.19 ± 0.51 | |
| Claustrum | 3.94 ± 0.72 | |
| Epithalamus | 4.61 ± 0.85 | |
| Frontal Lobe | 3.33 ± 0.61 | |
| Globus Pallidus | 3.84 ± 0.7 | |
| Hypothalamus | 3.39 ± 0.36 | |
| Insula | 3.26 ± 0.76 | |
| Limbic Lobe | 3.5 ± 0.81 | |
| Mesencephalon | 3.64 ± 0.59 | |
| Myelencephalon | 3.58 ± 0.74 | |
| Occipital Lobe | 4.44 ± 0.67 | |
| Parietal Lobe | 3.68 ± 0.66 | |
| Pontine Tegmentum | 3.58 ± 0.75 | |
| Striatum | 2.92 ± 0.64 | |
| Subthalamus | 3.13 ± 0.79 | |
| Temporal Lobe | 3.59 ± 0.68 | |
| Thalamus | 4.02 ± 0.64 | |
| White Matter | 5.06 ± 0.41 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4921511K06Rik | CB | Cerebellum | 46.05 | |
| 59.22 | | |||
| 4921511K06Rik | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| 4921511K06Rik | HIP | Hippocampal region | 53.18 | |
| 73.45 | | |||
| 4921511K06Rik | HPF | Hippocampal formation | 81.15 | |
| 100 | | |||
| 4921511K06Rik | HY | Hypothalamus | 79.9 | |
| 77.93 | | |||
| 4921511K06Rik | LSX | Lateral septal complex | 33.38 | |
| 27.67 | | |||
| 4921511K06Rik | MB | Midbrain | 82.06 | |
| 91.94 | | |||
| 4921511K06Rik | MY | Medulla | 79.09 | |
| 100 | | |||
| 4921511K06Rik | OLF | Olfactory bulb | 79.57 | |
| 82.64 | | |||
| 4921511K06Rik | P | Pons | 72.23 | |
| 96.24 | | |||
| 4921511K06Rik | PAL | Pallidum | 56.2 | |
| 63.6 | | |||
| 4921511K06Rik | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| 4921511K06Rik | sAMY | Striatum-like amygdalar nuclei | 61.99 | |
| 53.31 | | |||
| 4921511K06Rik | STR | Striatum | 29.44 | |
| 26.74 | | |||
| 4921511K06Rik | STRd | Striatum dorsal region | 19.85 | |
| 18.98 | | |||
| 4921511K06Rik | STRv | Striatum ventral region | 39.27 | |
| 33.56 | | |||
| 4921511K06Rik | TH | Thalamus | 100 | |
| 100 | |