Annotation Detail for C16orf58
Basic Information Top
Gene Symbol: | C16orf58 ( FLJ13868 ) |
---|---|
Gene Full Name: | chromosome 16 open reading frame 58 |
Band: | 16p11.2 |
Quick Links | Entrez ID:64755; OMIM: NA; Uniprot ID:CP058_HUMAN; ENSEMBL ID: ENSG00000140688; HGNC ID: 25848 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.9003
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 2 / 70761 | 28 | |
blastocyst | 4 / 62319 | 64 | |
fetus | 74 / 564012 | 131 | |
neonate | 4 / 31097 | 128 | |
infant | 2 / 23620 | 84 | |
juvenile | 7 / 55556 | 125 | |
adult | 177 / 1939121 | 91 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 222190_s_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 63.8 | |
Adipocyte | 18.9 | |
AdrenalCortex | 20.5 | |
Adrenalgland | 16.85 | |
Amygdala | 20.7 | |
Appendix | 19.35 | |
AtrioventricularNode | 14.7 | |
BDCA4+_DentriticCells | 29.1 | |
Bonemarrow | 18.95 | |
BronchialEpithelialCells | 19.2 | |
CD105+_Endothelial | 23.5 | |
CD14+_Monocytes | 20.95 | |
CD19+_BCells(neg._sel.) | 39.05 | |
CD33+_Myeloid | 25.35 | |
CD34+ | 47.4 | |
CD4+_Tcells | 34.35 | |
CD56+_NKCells | 23.85 | |
CD71+_EarlyErythroid | 24.95 | |
CD8+_Tcells | 29.3 | |
CardiacMyocytes | 21.35 | |
Caudatenucleus | 17.25 | |
Cerebellum | 15.75 | |
CerebellumPeduncles | 22.05 | |
CiliaryGanglion | 13.85 | |
CingulateCortex | 20.5 | |
Colorectaladenocarcinoma | 19.65 | |
DorsalRootGanglion | 14.8 | |
FetalThyroid | 24.9 | |
Fetalbrain | 19.25 | |
Fetalliver | 16.7 | |
Fetallung | 16.05 | |
GlobusPallidus | 17.6 | |
Heart | 24.2 | |
Hypothalamus | 21.1 | |
Kidney | 16.5 | |
Leukemia_chronicMyelogenousK-562 | 17.85 | |
Leukemia_promyelocytic-HL-60 | 16.05 | |
Leukemialymphoblastic(MOLT-4) | 14.8 | |
Liver | 37.8 | |
Lung | 21.05 | |
Lymphnode | 18.6 | |
Lymphoma_burkitts(Daudi) | 24.2 | |
Lymphoma_burkitts(Raji) | 27.75 | |
MedullaOblongata | 17.4 | |
OccipitalLobe | 17.65 | |
OlfactoryBulb | 15.15 | |
Ovary | 12.95 | |
Pancreas | 16.65 | |
PancreaticIslet | 30.65 | |
ParietalLobe | 21.15 | |
Pituitary | 23.05 | |
Placenta | 20.6 | |
Pons | 18.65 | |
PrefrontalCortex | 24.45 | |
Prostate | 27.4 | |
Salivarygland | 15.15 | |
SkeletalMuscle | 22.55 | |
Skin | 14.9 | |
SmoothMuscle | 21.45 | |
Spinalcord | 20.5 | |
SubthalamicNucleus | 17.8 | |
SuperiorCervicalGanglion | 21.95 | |
TemporalLobe | 17.65 | |
Testis | 16.85 | |
TestisGermCell | 16.6 | |
TestisIntersitial | 16.3 | |
TestisLeydigCell | 19.2 | |
TestisSeminiferousTubule | 16.65 | |
Thalamus | 19.7 | |
Thymus | 15.75 | |
Thyroid | 27.75 | |
Tongue | 19 | |
Tonsil | 18.85 | |
Trachea | 16.6 | |
TrigeminalGanglion | 19.4 | |
Uterus | 15.8 | |
UterusCorpus | 17.75 | |
WholeBlood | 20.1 | |
Wholebrain | 17.85 | |
colon | 16.65 | |
pineal_day | 26.08 | |
pineal_night | 24.12 | |
retina | 23.3 | |
small_intestine | 18.45 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_24_P65271
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 6.32 ± 0.3 | |
Basal Forebrain | 5.96 ± 0.32 | |
Basal Part of Pons | 5.86 ± 0.37 | |
Cerebellar Cortex | 6.13 ± 0.34 | |
Cerebellar Nuclei | 5.59 ± 0.37 | |
Claustrum | 6.31 ± 0.62 | |
Epithalamus | 5.67 ± 0.27 | |
Frontal Lobe | 5.84 ± 0.37 | |
Globus Pallidus | 5.93 ± 0.34 | |
Hypothalamus | 5.76 ± 0.3 | |
Insula | 5.95 ± 0.26 | |
Limbic Lobe | 6.25 ± 0.43 | |
Mesencephalon | 6.03 ± 0.45 | |
Myelencephalon | 6 ± 0.42 | |
Occipital Lobe | 6.26 ± 0.44 | |
Parietal Lobe | 5.94 ± 0.44 | |
Pontine Tegmentum | 5.9 ± 0.42 | |
Striatum | 6.07 ± 0.41 | |
Subthalamus | 5.78 ± 0.57 | |
Temporal Lobe | 5.99 ± 0.32 | |
Thalamus | 5.86 ± 0.34 | |
White Matter | 6.62 ± 0.22 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
BC017158 | CB | Cerebellum | 28.5 | |
35.09 | ||||
BC017158 | CTX | Cerebral cortex | 17.7 | |
12.19 | ||||
BC017158 | HIP | Hippocampal region | 18.71 | |
17.41 | ||||
BC017158 | HPF | Hippocampal formation | 19.11 | |
17.02 | ||||
BC017158 | HY | Hypothalamus | 10.14 | |
7.47 | ||||
BC017158 | LSX | Lateral septal complex | 9.26 | |
5.96 | ||||
BC017158 | MB | Midbrain | 16.72 | |
14.63 | ||||
BC017158 | MY | Medulla | 32.16 | |
35.27 | ||||
BC017158 | OLF | Olfactory bulb | 27.57 | |
20.97 | ||||
BC017158 | P | Pons | 16.8 | |
17.3 | ||||
BC017158 | PAL | Pallidum | 8.35 | |
6.61 | ||||
BC017158 | RHP | Retrohippocampal region | 19.36 | |
16.16 | ||||
BC017158 | sAMY | Striatum-like amygdalar nuclei | 7.21 | |
4.77 | ||||
BC017158 | STR | Striatum | 5.85 | |
4.6 | ||||
BC017158 | STRd | Striatum dorsal region | 4.23 | |
3.98 | ||||
BC017158 | STRv | Striatum ventral region | 8.25 | |
4.95 | ||||
BC017158 | TH | Thalamus | 13.56 | |
11.03 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00028919 | 25 | 381 | 405 | AATHGLMLGALQGDGPLPAELEELR | Peptide Atlas |