AutismKB 2.0

Annotation Detail for C11orf1


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Basic Information Top
Gene Symbol:C11orf1 ( FLJ23499 )
Gene Full Name: chromosome 11 open reading frame 1
Band: 11q23.1
Quick LinksEntrez ID:64776; OMIM: NA; Uniprot ID:CK001_HUMAN; ENSEMBL ID: ENSG00000137720; HGNC ID: 1163
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus31 / 56401254
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult33 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor2 / 2638457
glioma1 / 1068839
head and neck tumor1 / 1363027
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal76 / 336030722
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain8 / 11009897
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye2 / 2110549
heart3 / 8962633
intestine5 / 23447221
kidney10 / 21177747
larynx0 / 241450 
liver5 / 20774324
lung19 / 33697456
lymph1 / 4427022
lymph node1 / 9161010
mammary gland2 / 15327113
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid6 / 20539292
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate7 / 18934536
salivary gland0 / 201550 
skin1 / 2105744
spleen2 / 5395237
stomach1 / 9661910
testis15 / 33044245
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus4 / 23287817
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218925_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.3
Adipocyte11.05
AdrenalCortex18.1
Adrenalgland10.1
Amygdala10.3
Appendix23.15
AtrioventricularNode15.75
BDCA4+_DentriticCells10
Bonemarrow14.05
BronchialEpithelialCells11.25
CD105+_Endothelial10.45
CD14+_Monocytes12.35
CD19+_BCells(neg._sel.)11.3
CD33+_Myeloid15.2
CD34+12.65
CD4+_Tcells10.3
CD56+_NKCells13.4
CD71+_EarlyErythroid11.05
CD8+_Tcells9.85
CardiacMyocytes30.65
Caudatenucleus10.3
Cerebellum9.75
CerebellumPeduncles14.95
CiliaryGanglion14.95
CingulateCortex12.45
Colorectaladenocarcinoma11.25
DorsalRootGanglion13.3
FetalThyroid12.65
Fetalbrain10.9
Fetalliver10.4
Fetallung8.35
GlobusPallidus10.45
Heart25.1
Hypothalamus11.35
Kidney11.45
Leukemia_chronicMyelogenousK-56210.15
Leukemia_promyelocytic-HL-6010.4
Leukemialymphoblastic(MOLT-4)9.45
Liver20.8
Lung12.8
Lymphnode9
Lymphoma_burkitts(Daudi)16.25
Lymphoma_burkitts(Raji)20.35
MedullaOblongata10.45
OccipitalLobe10.1
OlfactoryBulb9.3
Ovary10.3
Pancreas10.6
PancreaticIslet13.2
ParietalLobe14.35
Pituitary13.25
Placenta11.05
Pons12.25
PrefrontalCortex12.1
Prostate12.65
Salivarygland10.35
SkeletalMuscle25
Skin14.95
SmoothMuscle13.4
Spinalcord11.65
SubthalamicNucleus12.2
SuperiorCervicalGanglion25.35
TemporalLobe11.95
Testis9.7
TestisGermCell8.55
TestisIntersitial9.9
TestisLeydigCell12.65
TestisSeminiferousTubule9.75
Thalamus12.05
Thymus8.2
Thyroid12.6
Tongue20.85
Tonsil11.8
Trachea9.35
TrigeminalGanglion28.3
Uterus9
UterusCorpus15.55
WholeBlood12.05
Wholebrain8.65
colon11.2
pineal_day13.1
pineal_night12.92
retina13.35
small_intestine10.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_2116_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.16 ± 0.26
Basal Forebrain7.17 ± 0.14
Basal Part of Pons6.84 ± 0.29
Cerebellar Cortex6.61 ± 0.12
Cerebellar Nuclei6.92 ± 0.39
Claustrum6.78 ± 0.31
Epithalamus7.37 ± 0.24
Frontal Lobe6.9 ± 0.29
Globus Pallidus7.65 ± 0.13
Hypothalamus7.22 ± 0.27
Insula6.85 ± 0.18
Limbic Lobe6.88 ± 0.43
Mesencephalon6.97 ± 0.42
Myelencephalon6.9 ± 0.41
Occipital Lobe6.6 ± 0.27
Parietal Lobe6.84 ± 0.33
Pontine Tegmentum6.98 ± 0.35
Striatum7.74 ± 0.33
Subthalamus6.85 ± 0.16
Temporal Lobe6.89 ± 0.28
Thalamus6.84 ± 0.28
White Matter6.57 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
1110032A03RikCBCerebellum4.97
5.47
1110032A03RikCTXCerebral cortex18.71
13.42
1110032A03RikHIPHippocampal region14.23
13.37
1110032A03RikHPFHippocampal formation15.24
13.14
1110032A03RikHYHypothalamus12.9
10.03
1110032A03RikLSXLateral septal complex2.05
1.68
1110032A03RikMBMidbrain4.97
5.57
1110032A03RikMYMedulla11.6
13.4
1110032A03RikOLFOlfactory bulb27.12
20.87
1110032A03RikPPons13.21
16.5
1110032A03RikPALPallidum7.93
7.89
1110032A03RikRHPRetrohippocampal region19.12
14.36
1110032A03RiksAMYStriatum-like amygdalar nuclei8.55
6.32
1110032A03RikSTRStriatum4.55
3.63
1110032A03RikSTRdStriatum dorsal region2.43
1.98
1110032A03RikSTRvStriatum ventral region11.03
8.69
1110032A03RikTHThalamus3.99
3.44
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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