AutismKB 2.0

Annotation Detail for ARMCX5


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Basic Information Top
Gene Symbol:ARMCX5 ( DKFZp686A22185,FLJ12969,FLJ13382 )
Gene Full Name: armadillo repeat containing, X-linked 5
Band: Xq22.1
Quick LinksEntrez ID:64860; OMIM: NA; Uniprot ID:ARMX5_HUMAN; ENSEMBL ID: ENSG00000125962; HGNC ID: 25772
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus68 / 564012120
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult123 / 193912163
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor3 / 11936925
germ cell tumor34 / 263845128
glioma3 / 10688328
head and neck tumor12 / 13630288
kidney tumor3 / 6895943
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal395 / 3360307117
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer2 / 10268019
retinoblastoma2 / 4635643
skin tumor2 / 12494916
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites2 / 4001549
bladder1 / 2975733
blood3 / 12347824
bone7 / 7165597
bone marrow3 / 4880161
brain255 / 1100989231
cervix1 / 4817120
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus1 / 2020949
eye14 / 21105466
heart4 / 8962644
intestine5 / 23447221
kidney15 / 21177770
larynx3 / 24145124
liver4 / 20774319
lung14 / 33697441
lymph0 / 442700 
lymph node2 / 9161021
mammary gland5 / 15327132
mouth7 / 67052104
muscle16 / 107715148
nerve2 / 15768126
ovary1 / 1020519
pancreas12 / 21481255
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta5 / 28082517
prostate12 / 18934563
salivary gland0 / 201550 
skin4 / 21057418
spleen7 / 53952129
stomach1 / 9661910
testis38 / 330442114
thymus4 / 8113149
thyroid3 / 4747363
tonsil0 / 169990 
trachea8 / 52413152
umbilical cord0 / 136800 
uterus14 / 23287860
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219335_at
Cell line Expression level Expression bar
721_B_lymphoblasts15.2
Adipocyte7.15
AdrenalCortex8.3
Adrenalgland6.55
Amygdala9.6
Appendix8.3
AtrioventricularNode6.9
BDCA4+_DentriticCells13.2
Bonemarrow8.1
BronchialEpithelialCells7.1
CD105+_Endothelial11.45
CD14+_Monocytes7.95
CD19+_BCells(neg._sel.)7.75
CD33+_Myeloid17.85
CD34+10
CD4+_Tcells11.55
CD56+_NKCells10.85
CD71+_EarlyErythroid7.1
CD8+_Tcells17.25
CardiacMyocytes10.55
Caudatenucleus7.95
Cerebellum6.05
CerebellumPeduncles8.65
CiliaryGanglion5.75
CingulateCortex7.7
Colorectaladenocarcinoma7.2
DorsalRootGanglion6.4
FetalThyroid8.2
Fetalbrain9.1
Fetalliver10.65
Fetallung8.8
GlobusPallidus5.4
Heart10.55
Hypothalamus7.95
Kidney6.25
Leukemia_chronicMyelogenousK-5626.65
Leukemia_promyelocytic-HL-605.4
Leukemialymphoblastic(MOLT-4)6.95
Liver10.7
Lung7.8
Lymphnode7.15
Lymphoma_burkitts(Daudi)9.55
Lymphoma_burkitts(Raji)10.6
MedullaOblongata7.1
OccipitalLobe7.95
OlfactoryBulb5.25
Ovary5.6
Pancreas7.85
PancreaticIslet8.1
ParietalLobe9.15
Pituitary9.2
Placenta7.35
Pons7.75
PrefrontalCortex10.9
Prostate11.25
Salivarygland6.25
SkeletalMuscle9.65
Skin6.35
SmoothMuscle7.9
Spinalcord7.9
SubthalamicNucleus7.25
SuperiorCervicalGanglion15.2
TemporalLobe6.85
Testis5.6
TestisGermCell5.9
TestisIntersitial6.2
TestisLeydigCell6.85
TestisSeminiferousTubule5.8
Thalamus7.7
Thymus5.65
Thyroid23.75
Tongue7.5
Tonsil7.2
Trachea6.15
TrigeminalGanglion8.35
Uterus7.45
UterusCorpus7.7
WholeBlood9.9
Wholebrain6.3
colon12.5
pineal_day12.34
pineal_night14.42
retina9.575
small_intestine28
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10243_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.69 ± 0.32
Basal Forebrain5.75 ± 0.2
Basal Part of Pons5.72 ± 0.26
Cerebellar Cortex5.86 ± 0.17
Cerebellar Nuclei5.58 ± 0.45
Claustrum5.49 ± 0.39
Epithalamus5.53 ± 0.32
Frontal Lobe5.63 ± 0.31
Globus Pallidus5.06 ± 0.2
Hypothalamus5.6 ± 0.26
Insula5.69 ± 0.26
Limbic Lobe5.64 ± 0.36
Mesencephalon5.72 ± 0.38
Myelencephalon5.55 ± 0.34
Occipital Lobe5.68 ± 0.39
Parietal Lobe5.73 ± 0.29
Pontine Tegmentum5.58 ± 0.3
Striatum5.25 ± 0.34
Subthalamus5.25 ± 0.57
Temporal Lobe5.75 ± 0.25
Thalamus5.51 ± 0.31
White Matter5.08 ± 0.34
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Armcx5CBCerebellum1.12
1.28
Armcx5CTXCerebral cortex1.03
0.82
Armcx5HIPHippocampal region1.12
1.07
Armcx5HPFHippocampal formation0.94
0.87
Armcx5HYHypothalamus0.7
0.67
Armcx5LSXLateral septal complex0.03
0
Armcx5MBMidbrain0.41
0.6
Armcx5MYMedulla4.31
4.65
Armcx5OLFOlfactory bulb2.3
1.68
Armcx5PPons1.63
1.88
Armcx5PALPallidum0.23
0.35
Armcx5RHPRetrohippocampal region0.63
0.56
Armcx5sAMYStriatum-like amygdalar nuclei0.1
0.11
Armcx5STRStriatum0.21
0.24
Armcx5STRdStriatum dorsal region0.18
0.2
Armcx5STRvStriatum ventral region0.37
0.29
Armcx5THThalamus0.36
0.39
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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