Annotation Detail for ST3GAL3
Basic Information Top
| Gene Symbol: | ST3GAL3 ( SIAT6,ST3GALII,ST3GalIII,ST3N ) |
|---|---|
| Gene Full Name: | ST3 beta-galactoside alpha-2,3-sialyltransferase 3 |
| Band: | 1p34.1 |
| Quick Links | Entrez ID:6487; OMIM: 606494; Uniprot ID:SIAT6_HUMAN; ENSEMBL ID: ENSG00000126091; HGNC ID: 10866 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.597915
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 41 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 81 / 3360307 | 24 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 32 / 1100989 | 29 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 2 / 24145 | 82 | |
| liver | 12 / 207743 | 57 | |
| lung | 20 / 336974 | 59 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P268123
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.39 ± 0.86 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.83 ± 0.36 | |
| Basal Part of Pons | 2.79 ± 0.25 | |
| Cerebellar Cortex | 3.19 ± 0.84 | |
| Cerebellar Nuclei | 3.53 ± 1.22 | |
| Claustrum | 3.5 ± 0.63 | |
| Epithalamus | 2.74 ± 0.86 | |
| Frontal Lobe | 3.15 ± 0.74 | |
| Globus Pallidus | 2.89 ± 0.44 | |
| Hypothalamus | 2.92 ± 0.5 | |
| Insula | 3.35 ± 0.68 | |
| Limbic Lobe | 2.99 ± 0.84 | |
| Mesencephalon | 3.21 ± 0.76 | |
| Myelencephalon | 3.1 ± 0.69 | |
| Occipital Lobe | 2.53 ± 0.72 | |
| Parietal Lobe | 3.19 ± 0.66 | |
| Pontine Tegmentum | 3.12 ± 0.75 | |
| Striatum | 2.83 ± 0.75 | |
| Subthalamus | 3.25 ± 0.82 | |
| Temporal Lobe | 3.14 ± 0.7 | |
| Thalamus | 3 ± 0.64 | |
| White Matter | 2.64 ± 0.23 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| St3gal3 | CB | Cerebellum | 53.42 | |
| 67.81 | | |||
| St3gal3 | CTX | Cerebral cortex | 82.14 | |
| 62.72 | | |||
| St3gal3 | HIP | Hippocampal region | 66.95 | |
| 67.32 | | |||
| St3gal3 | HPF | Hippocampal formation | 80.06 | |
| 68.79 | | |||
| St3gal3 | HY | Hypothalamus | 51.91 | |
| 32.78 | | |||
| St3gal3 | LSX | Lateral septal complex | 51.54 | |
| 23.92 | | |||
| St3gal3 | MB | Midbrain | 61.49 | |
| 46.26 | | |||
| St3gal3 | MY | Medulla | 70.66 | |
| 73.57 | | |||
| St3gal3 | OLF | Olfactory bulb | 86.65 | |
| 70.75 | | |||
| St3gal3 | P | Pons | 68.39 | |
| 70.53 | | |||
| St3gal3 | PAL | Pallidum | 50.34 | |
| 39.81 | | |||
| St3gal3 | RHP | Retrohippocampal region | 82.8 | |
| 70.35 | | |||
| St3gal3 | sAMY | Striatum-like amygdalar nuclei | 47.13 | |
| 27.3 | | |||
| St3gal3 | STR | Striatum | 32.26 | |
| 16.59 | | |||
| St3gal3 | STRd | Striatum dorsal region | 22.9 | |
| 11.64 | | |||
| St3gal3 | STRv | Striatum ventral region | 50.13 | |
| 23.99 | | |||
| St3gal3 | TH | Thalamus | 57.53 | |
| 40.19 | |