AutismKB 2.0

Annotation Detail for PAPOLG


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Basic Information Top
Gene Symbol:PAPOLG ( FLJ11805,FLJ12972,FLJ13482,FLJ14187,MGC133307,MGC133308 )
Gene Full Name: poly(A) polymerase gamma
Band: 2p16.1
Quick LinksEntrez ID:64895; OMIM: NA; Uniprot ID:PAPOG_HUMAN; ENSEMBL ID: ENSG00000115421; HGNC ID: 14982
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst3 / 6231948
fetus18 / 56401231
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult58 / 193912129
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor17 / 26384564
glioma2 / 10688318
head and neck tumor11 / 13630280
kidney tumor0 / 689590 
leukemia6 / 9584262
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia5 / 9725051
normal90 / 336030726
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma1 / 4635621
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow5 / 48801102
brain35 / 110098931
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye3 / 21105414
heart2 / 8962622
intestine3 / 23447212
kidney2 / 2117779
larynx1 / 2414541
liver1 / 2077434
lung10 / 33697429
lymph0 / 442700 
lymph node10 / 91610109
mammary gland3 / 15327119
mouth9 / 67052134
muscle3 / 10771527
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta15 / 28082553
prostate5 / 18934526
salivary gland1 / 2015549
skin3 / 21057414
spleen1 / 5395218
stomach2 / 9661920
testis44 / 330442133
thymus6 / 8113173
thyroid3 / 4747363
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus13 / 23287855
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219160_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.15
Adipocyte5.9
AdrenalCortex6.3
Adrenalgland5.1
Amygdala5.95
Appendix6.25
AtrioventricularNode4.9
BDCA4+_DentriticCells6.25
Bonemarrow5.95
BronchialEpithelialCells5.9
CD105+_Endothelial5.8
CD14+_Monocytes6.35
CD19+_BCells(neg._sel.)6.05
CD33+_Myeloid7.2
CD34+7.55
CD4+_Tcells6
CD56+_NKCells7.15
CD71+_EarlyErythroid5.55
CD8+_Tcells5.35
CardiacMyocytes7.45
Caudatenucleus5.3
Cerebellum4.75
CerebellumPeduncles7
CiliaryGanglion4.5
CingulateCortex6.5
Colorectaladenocarcinoma5.85
DorsalRootGanglion4.95
FetalThyroid5.85
Fetalbrain5.85
Fetalliver5.1
Fetallung4.55
GlobusPallidus4.35
Heart7.45
Hypothalamus6.25
Kidney5.1
Leukemia_chronicMyelogenousK-5625.35
Leukemia_promyelocytic-HL-605.2
Leukemialymphoblastic(MOLT-4)4.65
Liver8.2
Lung6.5
Lymphnode5.15
Lymphoma_burkitts(Daudi)7.65
Lymphoma_burkitts(Raji)8.3
MedullaOblongata5.55
OccipitalLobe5.3
OlfactoryBulb4.65
Ovary4.15
Pancreas4.85
PancreaticIslet6.3
ParietalLobe6.4
Pituitary6.8
Placenta6
Pons5.7
PrefrontalCortex7
Prostate7
Salivarygland4.75
SkeletalMuscle7.7
Skin4.95
SmoothMuscle6.7
Spinalcord6.3
SubthalamicNucleus5.4
SuperiorCervicalGanglion7.8
TemporalLobe5.55
Testis5.15
TestisGermCell5
TestisIntersitial5
TestisLeydigCell5.95
TestisSeminiferousTubule5.1
Thalamus6
Thymus4.65
Thyroid7.15
Tongue6
Tonsil5.8
Trachea4.95
TrigeminalGanglion6.4
Uterus4.75
UterusCorpus5.65
WholeBlood6.55
Wholebrain5.05
colon5.9
pineal_day7.22
pineal_night7.06
retina7.225
small_intestine5.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7654_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.49 ± 0.19
Basal Forebrain8.2 ± 0.17
Basal Part of Pons8.47 ± 0.19
Cerebellar Cortex8.46 ± 0.24
Cerebellar Nuclei8.48 ± 0.22
Claustrum8.74 ± 0.31
Epithalamus8.26 ± 0.27
Frontal Lobe8.34 ± 0.25
Globus Pallidus8.15 ± 0.1
Hypothalamus8.45 ± 0.27
Insula8.32 ± 0.25
Limbic Lobe8.53 ± 0.25
Mesencephalon8.45 ± 0.26
Myelencephalon8.39 ± 0.2
Occipital Lobe8.65 ± 0.26
Parietal Lobe8.42 ± 0.21
Pontine Tegmentum8.37 ± 0.2
Striatum8.36 ± 0.22
Subthalamus8.46 ± 0.23
Temporal Lobe8.38 ± 0.21
Thalamus8.25 ± 0.17
White Matter8.63 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
PapolgCBCerebellum8.74
8.34
PapolgCTXCerebral cortex30.61
20.76
PapolgHIPHippocampal region30.16
31.67
PapolgHPFHippocampal formation30.63
28
PapolgHYHypothalamus5.95
4.27
PapolgLSXLateral septal complex8.7
5.95
PapolgMBMidbrain8.49
6.97
PapolgMYMedulla7.85
7.49
PapolgOLFOlfactory bulb34.27
27.6
PapolgPPons9.43
8.83
PapolgPALPallidum9.93
8.08
PapolgRHPRetrohippocampal region31.25
23.31
PapolgsAMYStriatum-like amygdalar nuclei10.07
6.73
PapolgSTRStriatum14.58
10.1
PapolgSTRdStriatum dorsal region14.03
9.65
PapolgSTRvStriatum ventral region20.54
14.04
PapolgTHThalamus11.83
9.56
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAPOG_HUMAN_1 14 1 14 MKEMSANTVLDSQR PRIDE
PAp00429941 9 582 590 LSIPVIGAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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