AutismKB 2.0

Annotation Detail for RANBP17


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Basic Information Top
Gene Symbol:RANBP17 ( FLJ32916 )
Gene Full Name: RAN binding protein 17
Band: 5q35.1
Quick LinksEntrez ID:64901; OMIM: 606141; Uniprot ID:RBP17_HUMAN; ENSEMBL ID: ENSG00000204764; HGNC ID: 14428
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus36 / 56401263
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult13 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal76 / 336030722
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma2 / 4635643
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain8 / 11009897
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye3 / 21105414
heart0 / 896260 
intestine1 / 2344724
kidney7 / 21177733
larynx0 / 241450 
liver1 / 2077434
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen1 / 5395218
stomach2 / 9661920
testis21 / 33044263
thymus0 / 811310 
thyroid3 / 4747363
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219661_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.95
Adipocyte4.9
AdrenalCortex5.85
Adrenalgland4.45
Amygdala5.5
Appendix5.7
AtrioventricularNode4.1
BDCA4+_DentriticCells5.25
Bonemarrow5.15
BronchialEpithelialCells5.2
CD105+_Endothelial5.15
CD14+_Monocytes5.55
CD19+_BCells(neg._sel.)5.35
CD33+_Myeloid7.2
CD34+6.9
CD4+_Tcells5.35
CD56+_NKCells5.85
CD71+_EarlyErythroid5
CD8+_Tcells4.75
CardiacMyocytes7
Caudatenucleus4.7
Cerebellum4.3
CerebellumPeduncles6
CiliaryGanglion3.7
CingulateCortex5.45
Colorectaladenocarcinoma8.4
DorsalRootGanglion4.15
FetalThyroid5.1
Fetalbrain5.85
Fetalliver4.85
Fetallung5.05
GlobusPallidus3.8
Heart7.55
Hypothalamus6.35
Kidney4.65
Leukemia_chronicMyelogenousK-5624.7
Leukemia_promyelocytic-HL-604.55
Leukemialymphoblastic(MOLT-4)4.2
Liver7.4
Lung5.7
Lymphnode4.45
Lymphoma_burkitts(Daudi)6.85
Lymphoma_burkitts(Raji)7.7
MedullaOblongata4.9
OccipitalLobe4.65
OlfactoryBulb4.05
Ovary4.2
Pancreas4.25
PancreaticIslet5.35
ParietalLobe5.6
Pituitary6.1
Placenta5.3
Pons5.05
PrefrontalCortex6
Prostate6.3
Salivarygland4.4
SkeletalMuscle7.6
Skin4
SmoothMuscle5.95
Spinalcord5.7
SubthalamicNucleus4.75
SuperiorCervicalGanglion7.75
TemporalLobe4.85
Testis5.1
TestisGermCell5.65
TestisIntersitial6
TestisLeydigCell5.55
TestisSeminiferousTubule5.7
Thalamus5.35
Thymus4.25
Thyroid6.8
Tongue5.45
Tonsil5.1
Trachea4.4
TrigeminalGanglion6.3
Uterus4.25
UterusCorpus5.05
WholeBlood5.7
Wholebrain4.45
colon5.35
pineal_day6.48
pineal_night6.34
retina6.325
small_intestine5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1151_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.3 ± 0.78
Basal Forebrain7.12 ± 0.46
Basal Part of Pons6.85 ± 0.35
Cerebellar Cortex6.66 ± 0.33
Cerebellar Nuclei7.22 ± 0.34
Claustrum7.51 ± 0.65
Epithalamus6.23 ± 0.41
Frontal Lobe6.96 ± 0.51
Globus Pallidus7.35 ± 0.37
Hypothalamus6.86 ± 0.41
Insula6.77 ± 0.45
Limbic Lobe7.04 ± 0.51
Mesencephalon7.17 ± 0.43
Myelencephalon7.01 ± 0.53
Occipital Lobe7.12 ± 0.56
Parietal Lobe7.02 ± 0.48
Pontine Tegmentum6.98 ± 0.42
Striatum7.28 ± 0.53
Subthalamus7.18 ± 0.19
Temporal Lobe6.91 ± 0.54
Thalamus7.13 ± 0.41
White Matter6.95 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ranbp17CBCerebellum5.85
6.18
Ranbp17CTXCerebral cortex11.31
10.12
Ranbp17HIPHippocampal region8.57
7.48
Ranbp17HPFHippocampal formation9.77
7.87
Ranbp17HYHypothalamus4.16
3.13
Ranbp17LSXLateral septal complex1.1
0.99
Ranbp17MBMidbrain6.2
5.06
Ranbp17MYMedulla10.4
10.01
Ranbp17OLFOlfactory bulb17.24
14.41
Ranbp17PPons6.99
6.76
Ranbp17PALPallidum7.14
5.32
Ranbp17RHPRetrohippocampal region12.55
8.79
Ranbp17sAMYStriatum-like amygdalar nuclei5.3
3.66
Ranbp17STRStriatum7.37
4.84
Ranbp17STRdStriatum dorsal region7.95
5.46
Ranbp17STRvStriatum ventral region9.87
5.47
Ranbp17THThalamus8.89
6.7
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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