AutismKB 2.0

Annotation Detail for STAG3L4


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Basic Information Top
Gene Symbol:STAG3L4 ( FLJ13195 )
Gene Full Name: stromal antigen 3-like 4
Band: 7q11.21
Quick LinksEntrez ID:64940; OMIM: NA; Uniprot ID:STG34_HUMAN; ENSEMBL ID: ENSG00000106610; HGNC ID: 33887
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus9 / 56401215
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult50 / 193912125
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor7 / 26384526
glioma1 / 1068839
head and neck tumor3 / 13630222
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor10 / 10312796
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal80 / 336030723
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer3 / 10268029
retinoblastoma1 / 4635621
skin tumor6 / 12494948
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder0 / 297570 
blood3 / 12347824
bone2 / 7165527
bone marrow0 / 488010 
brain36 / 110098932
cervix1 / 4817120
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye13 / 21105461
heart2 / 8962622
intestine3 / 23447212
kidney6 / 21177728
larynx0 / 241450 
liver2 / 2077439
lung16 / 33697447
lymph2 / 4427045
lymph node3 / 9161032
mammary gland2 / 15327113
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary2 / 10205119
pancreas6 / 21481227
parathyroid2 / 2053997
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta2 / 2808257
prostate4 / 18934521
salivary gland0 / 201550 
skin10 / 21057447
spleen0 / 539520 
stomach2 / 9661920
testis5 / 33044215
thymus0 / 811310 
thyroid3 / 4747363
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218994_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.65
Adipocyte5.55
AdrenalCortex6.35
Adrenalgland4.85
Amygdala5.85
Appendix11.15
AtrioventricularNode4.7
BDCA4+_DentriticCells6.35
Bonemarrow5.8
BronchialEpithelialCells5.5
CD105+_Endothelial5.6
CD14+_Monocytes5.95
CD19+_BCells(neg._sel.)5.9
CD33+_Myeloid6.9
CD34+7
CD4+_Tcells5.75
CD56+_NKCells6.5
CD71+_EarlyErythroid5.25
CD8+_Tcells5.4
CardiacMyocytes7.6
Caudatenucleus5.05
Cerebellum4.6
CerebellumPeduncles6.5
CiliaryGanglion4.4
CingulateCortex6.55
Colorectaladenocarcinoma5.55
DorsalRootGanglion4.5
FetalThyroid5.5
Fetalbrain5.55
Fetalliver5
Fetallung4.6
GlobusPallidus4.15
Heart7.9
Hypothalamus6.1
Kidney4.8
Leukemia_chronicMyelogenousK-5625.1
Leukemia_promyelocytic-HL-604.95
Leukemialymphoblastic(MOLT-4)4.55
Liver8.05
Lung6.15
Lymphnode4.85
Lymphoma_burkitts(Daudi)7.35
Lymphoma_burkitts(Raji)8.05
MedullaOblongata5.15
OccipitalLobe5.05
OlfactoryBulb4.4
Ovary3.85
Pancreas4.55
PancreaticIslet6
ParietalLobe6.05
Pituitary6.6
Placenta5.75
Pons5.5
PrefrontalCortex7
Prostate6.5
Salivarygland4.6
SkeletalMuscle7.25
Skin4.9
SmoothMuscle6.35
Spinalcord6
SubthalamicNucleus5.15
SuperiorCervicalGanglion8.35
TemporalLobe5.2
Testis4.8
TestisGermCell4.6
TestisIntersitial4.7
TestisLeydigCell5.7
TestisSeminiferousTubule4.8
Thalamus5.8
Thymus4.45
Thyroid7
Tongue5.8
Tonsil5.45
Trachea4.75
TrigeminalGanglion6.25
Uterus4.55
UterusCorpus5.45
WholeBlood6.1
Wholebrain4.7
colon5.65
pineal_day7
pineal_night6.8
retina6.825
small_intestine5.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P111480
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.84 ± 0.26
Basal Forebrain4.87 ± 0.21
Basal Part of Pons4.73 ± 0.4
Cerebellar Cortex4.91 ± 0.35
Cerebellar Nuclei5.06 ± 0.65
Claustrum5 ± 0.51
Epithalamus4.34 ± 0.33
Frontal Lobe4.67 ± 0.4
Globus Pallidus4.58 ± 0.29
Hypothalamus4.47 ± 0.41
Insula4.5 ± 0.33
Limbic Lobe4.78 ± 0.43
Mesencephalon4.83 ± 0.47
Myelencephalon4.74 ± 0.37
Occipital Lobe5.18 ± 0.35
Parietal Lobe4.86 ± 0.34
Pontine Tegmentum4.69 ± 0.39
Striatum4.89 ± 0.41
Subthalamus4.88 ± 0.15
Temporal Lobe4.65 ± 0.41
Thalamus4.76 ± 0.38
White Matter4.2 ± 0.28
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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