AutismKB 2.0

Annotation Detail for MRPS5


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Basic Information Top
Gene Symbol:MRPS5 ( MRP-S5,S5mt )
Gene Full Name: mitochondrial ribosomal protein S5
Band: 2q11.1
Quick LinksEntrez ID:64969; OMIM: 611972; Uniprot ID:RT05_HUMAN; ENSEMBL ID: ENSG00000144029; HGNC ID: 14498
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus49 / 56401286
neonate2 / 3109764
infant2 / 2362084
juvenile2 / 5555635
adult119 / 193912161
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor5 / 11424643
esophageal tumor1 / 1729057
gastrointestinal tumor10 / 11936983
germ cell tumor17 / 26384564
glioma5 / 10688346
head and neck tumor15 / 136302110
kidney tumor4 / 6895958
leukemia4 / 9584241
liver tumor7 / 9635972
lung tumor4 / 10312738
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal178 / 336030752
ovarian tumor1 / 7668213
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS16 / 125680127
prostate cancer12 / 102680116
retinoblastoma4 / 4635686
skin tumor12 / 12494996
soft tissue/muscle tissue tumor13 / 125191103
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites7 / 40015174
bladder1 / 2975733
blood1 / 1234788
bone4 / 7165555
bone marrow2 / 4880140
brain56 / 110098950
cervix3 / 4817162
connective tissue10 / 14925566
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus1 / 2020949
eye17 / 21105480
heart8 / 8962689
intestine13 / 23447255
kidney10 / 21177747
larynx0 / 241450 
liver15 / 20774372
lung26 / 33697477
lymph1 / 4427022
lymph node10 / 91610109
mammary gland5 / 15327132
mouth12 / 67052178
muscle7 / 10771564
nerve2 / 15768126
ovary2 / 10205119
pancreas9 / 21481241
parathyroid1 / 2053948
pharynx5 / 41328120
pituitary gland2 / 16585120
placenta16 / 28082556
prostate20 / 189345105
salivary gland1 / 2015549
skin15 / 21057471
spleen0 / 539520 
stomach4 / 9661941
testis6 / 33044218
thymus5 / 8113161
thyroid5 / 47473105
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord2 / 13680146
uterus8 / 23287834
vascular2 / 5178038
Microarray in BioGPS Top
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11734_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.77 ± 0.18
Basal Forebrain8.81 ± 0.19
Basal Part of Pons8.65 ± 0.29
Cerebellar Cortex8.91 ± 0.23
Cerebellar Nuclei8.75 ± 0.38
Claustrum9.01 ± 0.42
Epithalamus8.3 ± 0.27
Frontal Lobe8.55 ± 0.29
Globus Pallidus8.91 ± 0.32
Hypothalamus8.39 ± 0.28
Insula8.41 ± 0.36
Limbic Lobe8.79 ± 0.36
Mesencephalon8.7 ± 0.29
Myelencephalon8.66 ± 0.3
Occipital Lobe8.98 ± 0.32
Parietal Lobe8.71 ± 0.28
Pontine Tegmentum8.7 ± 0.32
Striatum8.65 ± 0.35
Subthalamus8.59 ± 0.16
Temporal Lobe8.63 ± 0.27
Thalamus8.74 ± 0.27
White Matter9.63 ± 0.36
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Mrps5CBCerebellum33.61
53.4
Mrps5CTXCerebral cortex89.51
78.19
Mrps5HIPHippocampal region86.4
100
Mrps5HPFHippocampal formation87.84
100
Mrps5HYHypothalamus95.64
85.91
Mrps5LSXLateral septal complex68.41
51.6
Mrps5MBMidbrain55.71
54.55
Mrps5MYMedulla71.22
91.67
Mrps5OLFOlfactory bulb100
100
Mrps5PPons66.28
82.6
Mrps5PALPallidum77.81
80.65
Mrps5RHPRetrohippocampal region95.14
100
Mrps5sAMYStriatum-like amygdalar nuclei100
100
Mrps5STRStriatum68.26
54.39
Mrps5STRdStriatum dorsal region55.22
41.37
Mrps5STRvStriatum ventral region89.94
71.55
Mrps5THThalamus82.93
76.21
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00040485 22 367 388 GLHVVEIREECGPLPIVVASPR Peptide Atlas
RT05_HUMAN_275 10 275 284 AVHHLHYIER PRIDE
RT05_HUMAN_336 16 336 351 VSGSINMLSLTQGLFR PRIDE
RT05_HUMAN_356 19 356 374 QETHQQLADKKGLHVVEIR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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