AutismKB 2.0

Annotation Detail for SKI


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Basic Information Top
Gene Symbol:SKI ( SKV )
Gene Full Name: v-ski sarcoma viral oncogene homolog (avian)
Band: 1p36.33-p36.32
Quick LinksEntrez ID:6497; OMIM: 164780; Uniprot ID:SKI_HUMAN; ENSEMBL ID: ENSG00000157933; HGNC ID: 10896
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst4 / 6231964
fetus26 / 56401246
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult35 / 193912118
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor0 / 2638450 
glioma10 / 10688393
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia8 / 9584283
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal101 / 336030730
ovarian tumor2 / 7668226
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor10 / 12494980
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow0 / 488010 
brain22 / 110098919
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue11 / 21572250
esophagus1 / 2020949
eye9 / 21105442
heart2 / 8962622
intestine5 / 23447221
kidney10 / 21177747
larynx0 / 241450 
liver0 / 2077430 
lung6 / 33697417
lymph0 / 442700 
lymph node6 / 9161065
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas12 / 21481255
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate4 / 18934521
salivary gland0 / 201550 
skin17 / 21057480
spleen0 / 539520 
stomach1 / 9661910
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204270_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.95
Adipocyte6.15
AdrenalCortex6.75
Adrenalgland5.3
Amygdala6.5
Appendix7.45
AtrioventricularNode5.7
BDCA4+_DentriticCells6.2
Bonemarrow6.6
BronchialEpithelialCells6.05
CD105+_Endothelial6.15
CD14+_Monocytes6.5
CD19+_BCells(neg._sel.)6.8
CD33+_Myeloid7.95
CD34+7.5
CD4+_Tcells6.55
CD56+_NKCells7.1
CD71+_EarlyErythroid5.9
CD8+_Tcells5.85
CardiacMyocytes8.2
Caudatenucleus5.55
Cerebellum6.7
CerebellumPeduncles7.35
CiliaryGanglion5
CingulateCortex6.5
Colorectaladenocarcinoma6.15
DorsalRootGanglion5.35
FetalThyroid6
Fetalbrain6.15
Fetalliver5.35
Fetallung4.95
GlobusPallidus4.85
Heart8.75
Hypothalamus6.4
Kidney5.1
Leukemia_chronicMyelogenousK-5625.6
Leukemia_promyelocytic-HL-605.45
Leukemialymphoblastic(MOLT-4)4.95
Liver8.85
Lung6.8
Lymphnode5.15
Lymphoma_burkitts(Daudi)7.95
Lymphoma_burkitts(Raji)9
MedullaOblongata5.6
OccipitalLobe5.4
OlfactoryBulb4.8
Ovary4.45
Pancreas5.05
PancreaticIslet6.6
ParietalLobe6.85
Pituitary7.1
Placenta6.2
Pons5.95
PrefrontalCortex7.75
Prostate7.2
Salivarygland5.15
SkeletalMuscle8.65
Skin5.45
SmoothMuscle6.95
Spinalcord6.55
SubthalamicNucleus5.75
SuperiorCervicalGanglion7.35
TemporalLobe5.7
Testis5.3
TestisGermCell5.1
TestisIntersitial5.2
TestisLeydigCell6.2
TestisSeminiferousTubule5.25
Thalamus6.35
Thymus4.75
Thyroid8.8
Tongue6.7
Tonsil6.05
Trachea5.1
TrigeminalGanglion7.25
Uterus5.1
UterusCorpus5.95
WholeBlood6.8
Wholebrain5.05
colon6.2
pineal_day7.5
pineal_night7.44
retina7.475
small_intestine6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P362100
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.43 ± 0.2
Basal Forebrain9.08 ± 0.23
Basal Part of Pons8.79 ± 0.28
Cerebellar Cortex9.6 ± 0.25
Cerebellar Nuclei8.91 ± 0.39
Claustrum9.26 ± 0.46
Epithalamus9.43 ± 0.4
Frontal Lobe8.95 ± 0.36
Globus Pallidus8.59 ± 0.35
Hypothalamus8.56 ± 0.32
Insula9.12 ± 0.37
Limbic Lobe9.43 ± 0.36
Mesencephalon9 ± 0.41
Myelencephalon9.18 ± 0.41
Occipital Lobe9.73 ± 0.49
Parietal Lobe9.14 ± 0.35
Pontine Tegmentum9.14 ± 0.44
Striatum9.51 ± 0.51
Subthalamus8.86 ± 0.24
Temporal Lobe9.04 ± 0.34
Thalamus8.99 ± 0.27
White Matter8.85 ± 0.09
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
SkiCBCerebellum84.17
100
SkiCTXCerebral cortex44.22
31.63
SkiHIPHippocampal region59.02
86.49
SkiHPFHippocampal formation51.36
62.49
SkiHYHypothalamus2.73
2.3
SkiLSXLateral septal complex10.46
7.73
SkiMBMidbrain4.87
5.91
SkiMYMedulla8.54
10.13
SkiOLFOlfactory bulb41.1
36.93
SkiPPons4.4
4.25
SkiPALPallidum6.54
7.48
SkiRHPRetrohippocampal region39.39
31.21
SkisAMYStriatum-like amygdalar nuclei14.7
10.26
SkiSTRStriatum37.45
26.23
SkiSTRdStriatum dorsal region43.07
30.2
SkiSTRvStriatum ventral region39.72
27.5
SkiTHThalamus5.16
6.65
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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