AutismKB 2.0

Annotation Detail for SKIL


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Basic Information Top
Gene Symbol:SKIL ( SNO,SnoA,SnoI,SnoN )
Gene Full Name: SKI-like oncogene
Band: 3q26.2
Quick LinksEntrez ID:6498; OMIM: 165340; Uniprot ID:SKIL_HUMAN; ENSEMBL ID: ENSG00000136603; HGNC ID: 10897
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus7 / 56401212
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult43 / 193912122
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor3 / 26384511
glioma1 / 1068839
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal58 / 336030717
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood3 / 12347824
bone4 / 7165555
bone marrow0 / 488010 
brain5 / 11009894
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine2 / 2344728
kidney3 / 21177714
larynx0 / 241450 
liver5 / 20774324
lung4 / 33697411
lymph0 / 442700 
lymph node10 / 91610109
mammary gland7 / 15327145
mouth2 / 6705229
muscle7 / 10771564
nerve0 / 157680 
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta4 / 28082514
prostate0 / 1893450 
salivary gland0 / 201550 
skin2 / 2105749
spleen0 / 539520 
stomach3 / 9661931
testis11 / 33044233
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus6 / 23287825
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206675_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.8
Adipocyte9.85
AdrenalCortex17.55
Adrenalgland10.95
Amygdala9.7
Appendix17.65
AtrioventricularNode18.6
BDCA4+_DentriticCells9.3
Bonemarrow13.7
BronchialEpithelialCells10.15
CD105+_Endothelial9.8
CD14+_Monocytes11.85
CD19+_BCells(neg._sel.)10.6
CD33+_Myeloid12.2
CD34+11.55
CD4+_Tcells10.1
CD56+_NKCells10.35
CD71+_EarlyErythroid10.15
CD8+_Tcells8.3
CardiacMyocytes26.65
Caudatenucleus9.35
Cerebellum8.5
CerebellumPeduncles14.75
CiliaryGanglion14.25
CingulateCortex11.35
Colorectaladenocarcinoma10.4
DorsalRootGanglion12.2
FetalThyroid12.3
Fetalbrain10.05
Fetalliver9.45
Fetallung6.95
GlobusPallidus10
Heart24.7
Hypothalamus10
Kidney10.8
Leukemia_chronicMyelogenousK-5629.15
Leukemia_promyelocytic-HL-609.2
Leukemialymphoblastic(MOLT-4)7.2
Liver20.05
Lung11.4
Lymphnode7.9
Lymphoma_burkitts(Daudi)14
Lymphoma_burkitts(Raji)19.2
MedullaOblongata8.7
OccipitalLobe9.35
OlfactoryBulb7.9
Ovary9.4
Pancreas10.25
PancreaticIslet11.85
ParietalLobe13.35
Pituitary12.2
Placenta9.6
Pons10.5
PrefrontalCortex12.1
Prostate11.45
Salivarygland9.25
SkeletalMuscle21.85
Skin13.95
SmoothMuscle11.9
Spinalcord10.8
SubthalamicNucleus13.6
SuperiorCervicalGanglion22.6
TemporalLobe10.45
Testis8.4
TestisGermCell7.7
TestisIntersitial10.8
TestisLeydigCell11.7
TestisSeminiferousTubule8.95
Thalamus11.35
Thymus7.15
Thyroid11.75
Tongue16.75
Tonsil10.9
Trachea8.45
TrigeminalGanglion18.25
Uterus7.65
UterusCorpus13.55
WholeBlood10.9
Wholebrain7.6
colon10.15
pineal_day12.68
pineal_night12.2
retina12.575
small_intestine10
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P351215
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.02 ± 0.42
Basal Forebrain6.62 ± 0.19
Basal Part of Pons6.32 ± 0.33
Cerebellar Cortex6.2 ± 0.32
Cerebellar Nuclei6.66 ± 0.21
Claustrum7.21 ± 0.53
Epithalamus6.8 ± 0.27
Frontal Lobe6.47 ± 0.4
Globus Pallidus6.96 ± 0.21
Hypothalamus6.49 ± 0.29
Insula6.46 ± 0.34
Limbic Lobe6.82 ± 0.43
Mesencephalon6.69 ± 0.42
Myelencephalon6.61 ± 0.45
Occipital Lobe7.07 ± 0.49
Parietal Lobe6.64 ± 0.42
Pontine Tegmentum6.63 ± 0.34
Striatum6.94 ± 0.32
Subthalamus6.52 ± 0.26
Temporal Lobe6.6 ± 0.35
Thalamus6.3 ± 0.4
White Matter6.9 ± 0.37
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
SkilCBCerebellum76.09
100
SkilCTXCerebral cortex100
100
SkilHIPHippocampal region100
100
SkilHPFHippocampal formation100
100
SkilHYHypothalamus46.45
39.69
SkilLSXLateral septal complex64.43
61.41
SkilMBMidbrain71.41
66.66
SkilMYMedulla73.68
80.01
SkilOLFOlfactory bulb80.48
93.28
SkilPPons64.7
67.94
SkilPALPallidum57.74
58.67
SkilRHPRetrohippocampal region100
100
SkilsAMYStriatum-like amygdalar nuclei84.29
72.3
SkilSTRStriatum100
100
SkilSTRdStriatum dorsal region100
100
SkilSTRvStriatum ventral region100
100
SkilTHThalamus74.15
72.36
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00011343 17 71 87 RTCTSVPETLHLNPSLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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