AutismKB 2.0

Annotation Detail for SLAMF1


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Basic Information Top
Gene Symbol:SLAMF1 ( CD150,CDw150,SLAM )
Gene Full Name: signaling lymphocytic activation molecule family member 1
Band: 1q23.3
Quick LinksEntrez ID:6504; OMIM: 603492; Uniprot ID:SLAF1_HUMAN; ENSEMBL ID: ENSG00000117090; HGNC ID: 10903
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus6 / 56401210
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult15 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal34 / 336030710
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood3 / 12347824
bone1 / 7165513
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart2 / 8962622
intestine1 / 2344724
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node9 / 9161098
mammary gland2 / 15327113
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta7 / 28082524
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus34 / 81131419
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206181_at
Cell line Expression level Expression bar
721_B_lymphoblasts244.4
Adipocyte3.6
AdrenalCortex3.7
Adrenalgland3
Amygdala3.85
Appendix3.95
AtrioventricularNode2.7
BDCA4+_DentriticCells5.25
Bonemarrow3.6
BronchialEpithelialCells3.55
CD105+_Endothelial3.7
CD14+_Monocytes3.85
CD19+_BCells(neg._sel.)40.45
CD33+_Myeloid4.7
CD34+4.6
CD4+_Tcells32.45
CD56+_NKCells4.35
CD71+_EarlyErythroid3.35
CD8+_Tcells21.05
CardiacMyocytes4.65
Caudatenucleus3.25
Cerebellum2.9
CerebellumPeduncles4.05
CiliaryGanglion2.55
CingulateCortex3.65
Colorectaladenocarcinoma3.65
DorsalRootGanglion2.75
FetalThyroid3.5
Fetalbrain3.6
Fetalliver3.1
Fetallung3
GlobusPallidus2.65
Heart4.55
Hypothalamus3.95
Kidney2.9
Leukemia_chronicMyelogenousK-5623.25
Leukemia_promyelocytic-HL-604.95
Leukemialymphoblastic(MOLT-4)2.9
Liver4.75
Lung4.05
Lymphnode18.35
Lymphoma_burkitts(Daudi)4.6
Lymphoma_burkitts(Raji)30.3
MedullaOblongata3.25
OccipitalLobe3.25
OlfactoryBulb2.85
Ovary2.4
Pancreas2.9
PancreaticIslet3.85
ParietalLobe3.75
Pituitary4.2
Placenta3.8
Pons3.4
PrefrontalCortex4.5
Prostate4.3
Salivarygland2.9
SkeletalMuscle4.15
Skin2.85
SmoothMuscle4.1
Spinalcord3.85
SubthalamicNucleus3.3
SuperiorCervicalGanglion4.2
TemporalLobe3.3
Testis3.1
TestisGermCell3.05
TestisIntersitial3.05
TestisLeydigCell3.55
TestisSeminiferousTubule3.1
Thalamus3.65
Thymus58.05
Thyroid4.6
Tongue3.5
Tonsil9.75
Trachea3
TrigeminalGanglion3.55
Uterus3
UterusCorpus3.25
WholeBlood4.1
Wholebrain3.05
colon3.65
pineal_day4.54
pineal_night4.46
retina4.4
small_intestine3.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P62652
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.96 ± 1
Basal Forebrain1.6 ± 0.24
Basal Part of Pons1.26 ± 0.43
Cerebellar Cortex1.44 ± 0.77
Cerebellar Nuclei1.82 ± 0.66
Claustrum2.52 ± 0.74
Epithalamus1.27 ± 0.73
Frontal Lobe1.48 ± 0.78
Globus Pallidus2.05 ± 0.23
Hypothalamus1.67 ± 0.67
Insula1.38 ± 0.44
Limbic Lobe1.55 ± 0.64
Mesencephalon1.74 ± 0.72
Myelencephalon1.61 ± 0.66
Occipital Lobe1.55 ± 0.56
Parietal Lobe1.66 ± 0.86
Pontine Tegmentum1.64 ± 0.69
Striatum1.73 ± 0.51
Subthalamus1.69 ± 0.68
Temporal Lobe1.46 ± 0.61
Thalamus1.52 ± 0.58
White Matter1.85 ± 0.26
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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