Annotation Detail for RTN4R
Basic Information Top
| Gene Symbol: | RTN4R ( NGR,NOGOR ) |
|---|---|
| Gene Full Name: | reticulon 4 receptor |
| Band: | 22q11.21 |
| Quick Links | Entrez ID:65078; OMIM: 605566; Uniprot ID:RTN4R_HUMAN; ENSEMBL ID: ENSG00000040608; HGNC ID: 18601 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.30868
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 17 / 564012 | 30 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 37 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 45 / 3360307 | 13 | |
| ovarian tumor | 9 / 76682 | 117 |  |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 13 / 125680 | 103 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 30 / 1100989 | 27 | |
| cervix | 12 / 48171 | 249 |  |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 10 / 102051 | 97 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 2 / 330442 | 6 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_9902_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 12.54 ± 0.66 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 12.26 ± 0.24 | |
| Basal Part of Pons | 12.95 ± 0.23 | |
| Cerebellar Cortex | 12.26 ± 0.46 | |
| Cerebellar Nuclei | 12.51 ± 0.5 | |
| Claustrum | 12.13 ± 0.48 | |
| Epithalamus | 12.36 ± 0.43 | |
| Frontal Lobe | 12.66 ± 0.5 | |
| Globus Pallidus | 12.89 ± 0.26 | |
| Hypothalamus | 12.2 ± 0.58 | |
| Insula | 12.49 ± 0.71 | |
| Limbic Lobe | 12.69 ± 0.44 | |
| Mesencephalon | 12.32 ± 0.42 | |
| Myelencephalon | 12.61 ± 0.51 | |
| Occipital Lobe | 12.42 ± 0.43 | |
| Parietal Lobe | 12.47 ± 0.5 | |
| Pontine Tegmentum | 12.41 ± 0.58 | |
| Striatum | 12.76 ± 0.53 | |
| Subthalamus | 12.14 ± 0.41 | |
| Temporal Lobe | 12.63 ± 0.45 | |
| Thalamus | 12.56 ± 0.43 | |
| White Matter | 13.12 ± 0.12 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rtn4r | CB | Cerebellum | 48.72 | |
| 64.32 | | |||
| Rtn4r | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Rtn4r | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Rtn4r | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Rtn4r | HY | Hypothalamus | 1.8 | |
| 1.68 | | |||
| Rtn4r | LSX | Lateral septal complex | 5.82 | |
| 8 | | |||
| Rtn4r | MB | Midbrain | 6.66 | |
| 6.75 | | |||
| Rtn4r | MY | Medulla | 7.61 | |
| 9.78 | | |||
| Rtn4r | OLF | Olfactory bulb | 62.51 | |
| 76.89 | | |||
| Rtn4r | P | Pons | 7.25 | |
| 8.22 | | |||
| Rtn4r | PAL | Pallidum | 2.01 | |
| 2.06 | | |||
| Rtn4r | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Rtn4r | sAMY | Striatum-like amygdalar nuclei | 9.6 | |
| 9.2 | | |||
| Rtn4r | STR | Striatum | 5.24 | |
| 6.1 | | |||
| Rtn4r | STRd | Striatum dorsal region | 3.78 | |
| 4.58 | | |||
| Rtn4r | STRv | Striatum ventral region | 6.46 | |
| 7.25 | | |||
| Rtn4r | TH | Thalamus | 48.05 | |
| 49.86 | |