AutismKB 2.0

Annotation Detail for SLC2A1


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Basic Information Top
Gene Symbol:SLC2A1 ( DYT17,DYT18,GLUT,GLUT1,GLUT1DS,MGC141895,MGC141896,PED )
Gene Full Name: solute carrier family 2 (facilitated glucose transporter), member 1
Band: 1p34.2
Quick LinksEntrez ID:6513; OMIM: 138140; Uniprot ID:GTR1_HUMAN; ENSEMBL ID: ENSG00000117394; HGNC ID: 11005
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body35 / 70761494
blastocyst20 / 62319320
fetus112 / 564012198
neonate7 / 31097225
infant5 / 23620211
juvenile35 / 55556629
adult743 / 1939121383
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor3 / 12794234
bladder carcinoma0 / 174750 
breast (mammary gland) tumor15 / 94178159
cervical tumor3 / 3436687
chondrosarcoma8 / 8282396
colorectal tumor32 / 114246280
esophageal tumor27 / 172901561
gastrointestinal tumor19 / 119369159
germ cell tumor278 / 2638451053
glioma17 / 106883159
head and neck tumor177 / 1363021298
kidney tumor45 / 68959652
leukemia10 / 95842104
liver tumor74 / 96359767
lung tumor16 / 103127155
lymphoma10 / 71755139
non-neoplasia11 / 97250113
normal952 / 3360307283
ovarian tumor23 / 76682299
pancreatic tumor25 / 104616238
primitive neuroectodermal tumor of the CNS19 / 125680151
prostate cancer26 / 102680253
retinoblastoma0 / 463560 
skin tumor16 / 124949128
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites13 / 40015324
bladder1 / 2975733
blood7 / 12347856
bone10 / 71655139
bone marrow6 / 48801122
brain330 / 1100989299
cervix7 / 48171145
connective tissue12 / 14925580
ear2 / 16212123
embryonic tissue99 / 215722458
esophagus28 / 202091385
eye33 / 211054156
heart11 / 89626122
intestine43 / 234472183
kidney68 / 211777321
larynx9 / 24145372
liver85 / 207743409
lung28 / 33697483
lymph6 / 44270135
lymph node5 / 9161054
mammary gland17 / 153271110
mouth176 / 670522624
muscle3 / 10771527
nerve4 / 15768253
ovary31 / 102051303
pancreas25 / 214812116
parathyroid3 / 20539146
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta332 / 2808251182
prostate46 / 189345242
salivary gland0 / 201550 
skin43 / 210574204
spleen16 / 53952296
stomach5 / 9661951
testis147 / 330442444
thymus12 / 81131147
thyroid3 / 4747363
tonsil0 / 169990 
trachea24 / 52413457
umbilical cord5 / 13680365
uterus17 / 23287872
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201249_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.55
Adipocyte4.55
AdrenalCortex4.9
Adrenalgland4
Amygdala4.85
Appendix4.7
AtrioventricularNode3.65
BDCA4+_DentriticCells5
Bonemarrow6.25
BronchialEpithelialCells4.55
CD105+_Endothelial4.7
CD14+_Monocytes4.85
CD19+_BCells(neg._sel.)4.85
CD33+_Myeloid5.85
CD34+5.65
CD4+_Tcells4.9
CD56+_NKCells5.4
CD71+_EarlyErythroid79.95
CD8+_Tcells4.3
CardiacMyocytes5.85
Caudatenucleus4.15
Cerebellum3.75
CerebellumPeduncles5.25
CiliaryGanglion3.3
CingulateCortex4.7
Colorectaladenocarcinoma4.75
DorsalRootGanglion3.65
FetalThyroid4.5
Fetalbrain4.55
Fetalliver4.15
Fetallung3.85
GlobusPallidus3.45
Heart6.15
Hypothalamus5.05
Kidney3.85
Leukemia_chronicMyelogenousK-5624.2
Leukemia_promyelocytic-HL-604.05
Leukemialymphoblastic(MOLT-4)3.7
Liver6.25
Lung5.05
Lymphnode4
Lymphoma_burkitts(Daudi)5.85
Lymphoma_burkitts(Raji)6.7
MedullaOblongata4.2
OccipitalLobe4.15
OlfactoryBulb3.65
Ovary3.1
Pancreas4.55
PancreaticIslet4.95
ParietalLobe4.95
Pituitary5.4
Placenta8.85
Pons4.45
PrefrontalCortex5.7
Prostate5.35
Salivarygland3.9
SkeletalMuscle5.55
Skin3.6
SmoothMuscle5.2
Spinalcord4.9
SubthalamicNucleus4.25
SuperiorCervicalGanglion5.45
TemporalLobe4.25
Testis3.9
TestisGermCell3.7
TestisIntersitial3.8
TestisLeydigCell4.55
TestisSeminiferousTubule3.95
Thalamus4.7
Thymus3.6
Thyroid5.7
Tongue4.6
Tonsil4.5
Trachea3.9
TrigeminalGanglion4.7
Uterus3.8
UterusCorpus4.1
WholeBlood5
Wholebrain3.85
colon4.65
pineal_day5.72
pineal_night5.58
retina5.6
small_intestine4.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_582_PI416408490
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.86 ± 0.56
Basal Forebrain4.06 ± 0.58
Basal Part of Pons4.26 ± 0.65
Cerebellar Cortex4 ± 0.52
Cerebellar Nuclei4.88 ± 0.71
Claustrum3.47 ± 0.6
Epithalamus4.54 ± 0.55
Frontal Lobe4.47 ± 0.57
Globus Pallidus5.6 ± 0.53
Hypothalamus3.77 ± 0.67
Insula4.26 ± 0.47
Limbic Lobe4.09 ± 0.68
Mesencephalon4.5 ± 0.65
Myelencephalon4.51 ± 0.66
Occipital Lobe4.54 ± 0.75
Parietal Lobe4.1 ± 0.73
Pontine Tegmentum4.42 ± 0.74
Striatum5.22 ± 0.47
Subthalamus4.61 ± 0.61
Temporal Lobe4.24 ± 0.6
Thalamus4.87 ± 0.61
White Matter5.34 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc2a1CBCerebellum42.18
47.74
Slc2a1CTXCerebral cortex28.77
22.95
Slc2a1HIPHippocampal region21.91
24.26
Slc2a1HPFHippocampal formation22.53
22.94
Slc2a1HYHypothalamus22.88
18.65
Slc2a1LSXLateral septal complex27.83
25.64
Slc2a1MBMidbrain31.29
27.81
Slc2a1MYMedulla40.36
34.56
Slc2a1OLFOlfactory bulb41.01
31.87
Slc2a1PPons41.23
32.71
Slc2a1PALPallidum22.61
20.49
Slc2a1RHPRetrohippocampal region23.54
21.46
Slc2a1sAMYStriatum-like amygdalar nuclei21.07
18.3
Slc2a1STRStriatum25.99
21.36
Slc2a1STRdStriatum dorsal region26.36
21.82
Slc2a1STRvStriatum ventral region25.39
18.72
Slc2a1THThalamus30.28
28.13
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00003089 12 457 468 GRTFDEIASGFR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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