Annotation Detail for SLC4A2
Basic Information Top
| Gene Symbol: | SLC4A2 ( AE2,BND3L,EPB3L1,HKB3,NBND3 ) |
|---|---|
| Gene Full Name: | solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1) |
| Band: | 7q36.1 |
| Quick Links | Entrez ID:6522; OMIM: 109280; Uniprot ID:B3A2_HUMAN; ENSEMBL ID: ENSG00000164889; HGNC ID: 11028 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.647069
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 11 / 70761 | 155 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 11 / 564012 | 19 | |
| neonate | 3 / 31097 | 96 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 5 / 55556 | 89 | |
| adult | 135 / 1939121 | 69 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 19 / 114246 | 166 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 16 / 119369 | 134 | |
| germ cell tumor | 39 / 263845 | 147 | |
| glioma | 15 / 106883 | 140 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 6 / 68959 | 87 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 11 / 103127 | 106 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 179 / 3360307 | 53 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 27 / 104616 | 258 |  |
| primitive neuroectodermal tumor of the CNS | 46 / 125680 | 366 | |
| prostate cancer | 16 / 102680 | 155 | |
| retinoblastoma | 15 / 46356 | 323 | |
| skin tumor | 18 / 124949 | 144 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 5 / 40015 | 124 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 98 / 1100989 | 89 | |
| cervix | 9 / 48171 | 186 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 20 / 215722 | 92 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 34 / 211054 | 161 | |
| heart | 1 / 89626 | 11 | |
| intestine | 31 / 234472 | 132 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 19 / 336974 | 56 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 35 / 214812 | 162 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 32 / 280825 | 113 | |
| prostate | 19 / 189345 | 100 | |
| salivary gland | 3 / 20155 | 148 | |
| skin | 23 / 210574 | 109 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 6 / 96619 | 62 | |
| testis | 37 / 330442 | 111 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 4 / 16999 | 235 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 20 / 232878 | 85 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 202111_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 62.6 | |
| Adipocyte | 56.9 | |
| AdrenalCortex | 66.55 | |
| Adrenalgland | 41.5 | |
| Amygdala | 49.65 | |
| Appendix | 47.35 | |
| AtrioventricularNode | 36.05 | |
| BDCA4+_DentriticCells | 58.3 | |
| Bonemarrow | 46.85 | |
| BronchialEpithelialCells | 29.5 | |
| CD105+_Endothelial | 29.75 | |
| CD14+_Monocytes | 81.4 | |
| CD19+_BCells(neg._sel.) | 31.1 | |
| CD33+_Myeloid | 83.4 | |
| CD34+ | 42.2 | |
| CD4+_Tcells | 47.85 | |
| CD56+_NKCells | 18.2 | |
| CD71+_EarlyErythroid | 28.2 | |
| CD8+_Tcells | 39.75 | |
| CardiacMyocytes | 90.05 | |
| Caudatenucleus | 46.65 | |
| Cerebellum | 44.1 | |
| CerebellumPeduncles | 53.5 | |
| CiliaryGanglion | 33.05 | |
| CingulateCortex | 48.15 | |
| Colorectaladenocarcinoma | 66.65 | |
| DorsalRootGanglion | 49.55 | |
| FetalThyroid | 47.1 | |
| Fetalbrain | 18.4 | |
| Fetalliver | 42.7 | |
| Fetallung | 51.8 | |
| GlobusPallidus | 57.25 | |
| Heart | 85.15 | |
| Hypothalamus | 46.95 | |
| Kidney | 56 | |
| Leukemia_chronicMyelogenousK-562 | 146.35 | |
| Leukemia_promyelocytic-HL-60 | 32.1 | |
| Leukemialymphoblastic(MOLT-4) | 68.55 | |
| Liver | 182.25 | |
| Lung | 53.3 | |
| Lymphnode | 40.65 | |
| Lymphoma_burkitts(Daudi) | 73.75 | |
| Lymphoma_burkitts(Raji) | 67.5 | |
| MedullaOblongata | 43.55 | |
| OccipitalLobe | 42.7 | |
| OlfactoryBulb | 38.15 | |
| Ovary | 31 | |
| Pancreas | 37 | |
| PancreaticIslet | 55.7 | |
| ParietalLobe | 52.75 | |
| Pituitary | 55.75 | |
| Placenta | 193.25 | |
| Pons | 45.7 | |
| PrefrontalCortex | 40.35 | |
| Prostate | 60.5 | |
| Salivarygland | 37.25 | |
| SkeletalMuscle | 56.95 | |
| Skin | 30.1 | |
| SmoothMuscle | 82.4 | |
| Spinalcord | 53.1 | |
| SubthalamicNucleus | 43.65 | |
| SuperiorCervicalGanglion | 54.8 | |
| TemporalLobe | 45.4 | |
| Testis | 40.7 | |
| TestisGermCell | 29.45 | |
| TestisIntersitial | 35.2 | |
| TestisLeydigCell | 47.5 | |
| TestisSeminiferousTubule | 40.35 | |
| Thalamus | 67.55 | |
| Thymus | 40.2 | |
| Thyroid | 59.9 | |
| Tongue | 49.4 | |
| Tonsil | 43 | |
| Trachea | 43.55 | |
| TrigeminalGanglion | 56.45 | |
| Uterus | 38.9 | |
| UterusCorpus | 54.75 | |
| WholeBlood | 37.6 | |
| Wholebrain | 36.1 | |
| colon | 48.1 | |
| pineal_day | 536.8 | |
| pineal_night | 678.96 | |
| retina | 428 | |
| small_intestine | 45.8 | |
- Probe name: CUST_8459_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.12 ± 1.03 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.64 ± 0.21 | |
| Basal Part of Pons | 1.44 ± 0.57 | |
| Cerebellar Cortex | 1.5 ± 0.71 | |
| Cerebellar Nuclei | 1.88 ± 0.68 | |
| Claustrum | 2.22 ± 0.67 | |
| Epithalamus | 1.51 ± 0.63 | |
| Frontal Lobe | 1.6 ± 0.73 | |
| Globus Pallidus | 2.27 ± 0.65 | |
| Hypothalamus | 1.65 ± 0.8 | |
| Insula | 1.42 ± 0.51 | |
| Limbic Lobe | 1.55 ± 0.62 | |
| Mesencephalon | 1.78 ± 0.72 | |
| Myelencephalon | 1.68 ± 0.68 | |
| Occipital Lobe | 1.39 ± 0.54 | |
| Parietal Lobe | 1.42 ± 0.62 | |
| Pontine Tegmentum | 1.65 ± 0.61 | |
| Striatum | 2.16 ± 0.58 | |
| Subthalamus | 1.75 ± 0.59 | |
| Temporal Lobe | 1.6 ± 0.65 | |
| Thalamus | 1.67 ± 0.62 | |
| White Matter | 3.05 ± 0.28 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc4a2 | CB | Cerebellum | 12.76 | |
| 15.7 | | |||
| Slc4a2 | CTX | Cerebral cortex | 5.13 | |
| 4.84 | | |||
| Slc4a2 | HIP | Hippocampal region | 3.85 | |
| 4.85 | | |||
| Slc4a2 | HPF | Hippocampal formation | 3.28 | |
| 3.59 | | |||
| Slc4a2 | HY | Hypothalamus | 6.82 | |
| 6.48 | | |||
| Slc4a2 | LSX | Lateral septal complex | 3.28 | |
| 4.28 | | |||
| Slc4a2 | MB | Midbrain | 12.9 | |
| 13.65 | | |||
| Slc4a2 | MY | Medulla | 39.53 | |
| 52.32 | | |||
| Slc4a2 | OLF | Olfactory bulb | 4.46 | |
| 3.22 | | |||
| Slc4a2 | P | Pons | 31.23 | |
| 35.83 | | |||
| Slc4a2 | PAL | Pallidum | 4.28 | |
| 3.55 | | |||
| Slc4a2 | RHP | Retrohippocampal region | 2.89 | |
| 2.34 | | |||
| Slc4a2 | sAMY | Striatum-like amygdalar nuclei | 1.18 | |
| 0.99 | | |||
| Slc4a2 | STR | Striatum | 3.12 | |
| 2.73 | | |||
| Slc4a2 | STRd | Striatum dorsal region | 3.71 | |
| 2.94 | | |||
| Slc4a2 | STRv | Striatum ventral region | 2.56 | |
| 2.36 | | |||
| Slc4a2 | TH | Thalamus | 12.91 | |
| 13.07 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000628 | 19 | 316 | 334 | APHKPHEVFVELNELLLDK | Peptide Atlas |