AutismKB 2.0

Annotation Detail for LGALS9C


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Basic Information Top
Gene Symbol:LGALS9C ( MGC125972 )
Gene Full Name: lectin, galactoside-binding, soluble, 9C
Band: 17p11.2
Quick LinksEntrez ID:654346; OMIM: NA; Uniprot ID:LEG9C_HUMAN; ENSEMBL ID: ENSG00000171916; HGNC ID: 33874
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus1 / 5640121
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult8 / 19391214
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal17 / 33603075
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus1 / 2020949
eye2 / 2110549
heart0 / 896260 
intestine14 / 23447259
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach1 / 9661910
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: Primary tumors (U95A)
  • Affymatrix Probe ID: 38091_at
Cell line Expression level Expression bar
Pr1T8.827
Pr4T9.507
Pr5T8.963
Pr7T11.006
Pr1N12.714
Pr5N7.327
Pr6T7.041
Pr3N14.208
Pr3T9.964
Pr4N16.464
Pr2N8.967
Pr8N6.687
Pr8T6.974
Pr9N6.418
Pr10N14.12
Pr10T12.72
Pr9T15.204
Pr11T8.324
Pr12T6.887
Pr13AT7.443
Pr13BT6.805
Pr21T9.467
Pr22T8.028
Pr30T10.275
Pr23T7.15
Pr19T9.324
Pr26T17.956
Pr31T9.662
Pr16T10.671
Pr17T12.154
Pr24T6.798
Pr27T7.301
Pr29T7.327
OVR1027.991
HUOVR89.929
G249.178
G39.944
G518.628
G67.671
G8303.295
G913.944
CO7T41.754
CO8T166.747
CO15T131.243
CO27T144.208
CO30T54.072
CO32T245.725
CO40T148.659
CO52N184.122
CO62N37.906
K114.291
K230.351
K316.985
K426.967
K14N7.8
K1615.094
K177.695
K1943.423
K2022.739
K2210.623
CO9T55.245
CO20T195.073
CO24T89.033
CO36N168.265
K1844.65
P1N18.925
P2N10.591
P5N31.849
P834.707
P1175.853
P1725.864
K2120.078
K25N7.453
K28N7.469
CO42T47.51
P22116.968
P13N207.162
LU11T13.46
LU16T28.491
LU7T25.706
LU8T41.288
LU12T14.682
LU13T147.312
LU5T67.191
LU6T55.342
LU14T20.838
LU17T76.201
LU50N22.143
LU52N48.241
LU18T151.546
LU55N30.366
LU3N12.97
P16B89.488
P23107.418
OVR1671.599
OVR1976.475
OVR2776.391
OVR288.858
OVR278E11.026
OVR249.365
OVR58.966
OVR814.488
OVR1116.83
OVR1221.7
OVR1312.819
OVR2282.559
OVR26143.308
OVR1027.935
OVR278S7.919
OVR146.851
LU19T21.436
LU20T15.3
LU24T20.646
LU25T14.106
LU31T51.433
LU34T12.757
LU39T226.266
CO14T207.525
CO21T196.641
CO23T25.353
CO41N254.432
LU40T20.386
LU41T138.448
LU44T29.939
LU46T18.572
LU49T23.943
L5N7.321
LU42T14.823
LU30T59.369
LU43T34.013
CO5T43.262
CO44T226.483
CO49T76.594
CO51T19.531
CO56T31.366
CO61T101.603
LU26T75.44
LU33T30.934
LU36T124.446
CO43T21.865
G188.226
G46206.777
L11T7.567
L13N6.994
L30T16.054
L31T139.954
L32T7.69
L34T31.216
L35T22.669
B1N27.942
B5N13.181
B8T106.568
B10T11.673
B14T31.442
B16T32.482
B17T17.579
B1NR17.995
B20T24.735
B51NR27.396
B6T7.168
B15T36.845
B21T30.91
B29T7.492
B31T36.929
B32T329.022
B24T15.031
B46T131.175
B34T47.967
B36T26.21
B37T31.657
B38T20.712
B39T18.446
X10220.067
X116_0239.409
G28085.454
X4630.313
X58192.285
G18612.28
G29619.775
L38T68.629
L31T.223.68
L26N21.159
N257ANTR15.37
N285BODY51.796
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P101025
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.62 ± 0.56
Basal Forebrain4.49 ± 0.55
Basal Part of Pons4.97 ± 0.52
Cerebellar Cortex4.87 ± 0.54
Cerebellar Nuclei5.17 ± 0.42
Claustrum4.42 ± 0.86
Epithalamus4.93 ± 0.38
Frontal Lobe4.65 ± 0.5
Globus Pallidus4.61 ± 0.55
Hypothalamus4.35 ± 0.77
Insula4.58 ± 0.48
Limbic Lobe4.7 ± 0.57
Mesencephalon4.55 ± 0.48
Myelencephalon4.74 ± 0.51
Occipital Lobe5.02 ± 0.48
Parietal Lobe4.6 ± 0.57
Pontine Tegmentum4.58 ± 0.63
Striatum4.69 ± 0.47
Subthalamus4.67 ± 0.46
Temporal Lobe4.84 ± 0.45
Thalamus4.68 ± 0.42
White Matter4.82 ± 0.76
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010061 12 66 77 FEDGGYVVCNTR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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