Annotation Detail for SLC8A3
Basic Information Top
| Gene Symbol: | SLC8A3 ( NCX3 ) |
|---|---|
| Gene Full Name: | solute carrier family 8 (sodium/calcium exchanger), member 3 |
| Band: | 14q24.2 |
| Quick Links | Entrez ID:6547; OMIM: 607991; Uniprot ID:NAC3_HUMAN; ENSEMBL ID: ENSG00000100678; HGNC ID: 11070 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.337696
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 16 / 564012 | 28 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 18 / 1939121 | 9 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 47 / 3360307 | 13 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 |  |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 38 / 1100989 | 34 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P48487
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.82 ± 0.63 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.46 ± 0.57 | |
| Basal Part of Pons | 3.76 ± 0.63 | |
| Cerebellar Cortex | 3.55 ± 0.49 | |
| Cerebellar Nuclei | 3.47 ± 0.58 | |
| Claustrum | 3.68 ± 0.56 | |
| Epithalamus | 2.98 ± 0.84 | |
| Frontal Lobe | 3.64 ± 0.59 | |
| Globus Pallidus | 3.23 ± 0.71 | |
| Hypothalamus | 3.12 ± 0.61 | |
| Insula | 3.62 ± 0.56 | |
| Limbic Lobe | 3.68 ± 0.55 | |
| Mesencephalon | 3.63 ± 0.61 | |
| Myelencephalon | 3.55 ± 0.57 | |
| Occipital Lobe | 3.54 ± 0.62 | |
| Parietal Lobe | 3.62 ± 0.54 | |
| Pontine Tegmentum | 3.5 ± 0.65 | |
| Striatum | 3.29 ± 0.65 | |
| Subthalamus | 3.33 ± 0.66 | |
| Temporal Lobe | 3.6 ± 0.55 | |
| Thalamus | 3.72 ± 0.61 | |
| White Matter | 2.21 ± 0.95 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc8a3 | CB | Cerebellum | 57.93 | |
| 74.82 | | |||
| Slc8a3 | CTX | Cerebral cortex | 34.87 | |
| 25.79 | | |||
| Slc8a3 | HIP | Hippocampal region | 14.37 | |
| 15.41 | | |||
| Slc8a3 | HPF | Hippocampal formation | 21.71 | |
| 20.56 | | |||
| Slc8a3 | HY | Hypothalamus | 88.39 | |
| 81.6 | | |||
| Slc8a3 | LSX | Lateral septal complex | 67.8 | |
| 48.92 | | |||
| Slc8a3 | MB | Midbrain | 89.75 | |
| 91.7 | | |||
| Slc8a3 | MY | Medulla | 68.78 | |
| 86.31 | | |||
| Slc8a3 | OLF | Olfactory bulb | 85.25 | |
| 90.48 | | |||
| Slc8a3 | P | Pons | 68.66 | |
| 82.25 | | |||
| Slc8a3 | PAL | Pallidum | 63.8 | |
| 63.14 | | |||
| Slc8a3 | RHP | Retrohippocampal region | 33.58 | |
| 27.21 | | |||
| Slc8a3 | sAMY | Striatum-like amygdalar nuclei | 73.55 | |
| 61.75 | | |||
| Slc8a3 | STR | Striatum | 58.21 | |
| 44.1 | | |||
| Slc8a3 | STRd | Striatum dorsal region | 58.91 | |
| 43.94 | | |||
| Slc8a3 | STRv | Striatum ventral region | 47.41 | |
| 36.42 | | |||
| Slc8a3 | TH | Thalamus | 82.31 | |
| 75.78 | |