AutismKB 2.0

Annotation Detail for SLC13A1


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Basic Information Top
Gene Symbol:SLC13A1 ( NAS1,NaSi-1 )
Gene Full Name: solute carrier family 13 (sodium/sulfate symporters), member 1
Band: 7q31.32
Quick LinksEntrez ID:6561; OMIM: 606193; Uniprot ID:S13A1_HUMAN; ENSEMBL ID: ENSG00000081800; HGNC ID: 10916
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult0 / 19391210 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal22 / 33603076
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine2 / 2344728
kidney26 / 211777122
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220502_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.45
Adipocyte9.6
AdrenalCortex17.55
Adrenalgland9.85
Amygdala9.5
Appendix19.65
AtrioventricularNode16.25
BDCA4+_DentriticCells8.65
Bonemarrow14.45
BronchialEpithelialCells9.25
CD105+_Endothelial9.75
CD14+_Monocytes11.5
CD19+_BCells(neg._sel.)10.25
CD33+_Myeloid11.85
CD34+11.35
CD4+_Tcells9.3
CD56+_NKCells10.4
CD71+_EarlyErythroid10.2
CD8+_Tcells8.3
CardiacMyocytes26.7
Caudatenucleus9.1
Cerebellum8.3
CerebellumPeduncles14.1
CiliaryGanglion14.55
CingulateCortex11.2
Colorectaladenocarcinoma9.7
DorsalRootGanglion13.25
FetalThyroid11.25
Fetalbrain9.3
Fetalliver9.05
Fetallung6.85
GlobusPallidus9.5
Heart24.8
Hypothalamus9.9
Kidney11
Leukemia_chronicMyelogenousK-5628.75
Leukemia_promyelocytic-HL-608.7
Leukemialymphoblastic(MOLT-4)7.2
Liver19.65
Lung10.75
Lymphnode7.8
Lymphoma_burkitts(Daudi)14.25
Lymphoma_burkitts(Raji)18.1
MedullaOblongata8.4
OccipitalLobe8.9
OlfactoryBulb7.65
Ovary10.6
Pancreas9.65
PancreaticIslet11.2
ParietalLobe13.5
Pituitary12.1
Placenta9.2
Pons11.05
PrefrontalCortex10.8
Prostate11.05
Salivarygland9.2
SkeletalMuscle22.15
Skin15.75
SmoothMuscle11.45
Spinalcord10.35
SubthalamicNucleus10.9
SuperiorCervicalGanglion24.2
TemporalLobe10.5
Testis8.2
TestisGermCell7.4
TestisIntersitial10.15
TestisLeydigCell11.75
TestisSeminiferousTubule8.85
Thalamus11.1
Thymus7
Thyroid11.05
Tongue16.55
Tonsil10.5
Trachea7.95
TrigeminalGanglion20.6
Uterus7.5
UterusCorpus12.9
WholeBlood10.25
Wholebrain7.25
colon9.5
pineal_day11.72
pineal_night11.48
retina12
small_intestine9.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P71226
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.25 ± 1.08
Basal Forebrain1.78 ± 0.25
Basal Part of Pons1.39 ± 0.51
Cerebellar Cortex1.76 ± 0.87
Cerebellar Nuclei2.09 ± 0.71
Claustrum2.74 ± 0.97
Epithalamus1.47 ± 0.72
Frontal Lobe1.71 ± 0.75
Globus Pallidus2.34 ± 0.38
Hypothalamus1.97 ± 0.49
Insula1.66 ± 0.52
Limbic Lobe1.83 ± 0.64
Mesencephalon2.02 ± 0.75
Myelencephalon1.84 ± 0.68
Occipital Lobe1.9 ± 0.74
Parietal Lobe1.73 ± 0.65
Pontine Tegmentum1.92 ± 0.68
Striatum1.99 ± 0.57
Subthalamus1.96 ± 0.63
Temporal Lobe1.73 ± 0.67
Thalamus1.76 ± 0.61
White Matter2.22 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc13a1CBCerebellum0.89
1.01
Slc13a1CTXCerebral cortex0.31
0.3
Slc13a1HIPHippocampal region0.17
0.22
Slc13a1HPFHippocampal formation0.2
0.2
Slc13a1HYHypothalamus0.09
0.09
Slc13a1LSXLateral septal complex0.06
0
Slc13a1MBMidbrain0.26
0.43
Slc13a1MYMedulla0.36
0.36
Slc13a1OLFOlfactory bulb0.63
0.52
Slc13a1PPons0.45
0.98
Slc13a1PALPallidum0.02
0.02
Slc13a1RHPRetrohippocampal region0.3
0.2
Slc13a1sAMYStriatum-like amygdalar nuclei0.37
0.41
Slc13a1STRStriatum0.13
0.17
Slc13a1STRdStriatum dorsal region0.13
0.2
Slc13a1STRvStriatum ventral region0.03
0.01
Slc13a1THThalamus0.21
0.18
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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