AutismKB 2.0

Annotation Detail for SLC16A1


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Basic Information Top
Gene Symbol:SLC16A1 ( FLJ36745,HHF7,MCT,MCT1,MGC44475 )
Gene Full Name: solute carrier family 16, member 1 (monocarboxylic acid transporter 1)
Band: 1p13.2
Quick LinksEntrez ID:6566; OMIM: 600682; Uniprot ID:MOT1_HUMAN; ENSEMBL ID: ENSG00000155380; HGNC ID: 10922
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body14 / 70761197
blastocyst38 / 62319609
fetus65 / 564012115
neonate6 / 31097192
infant7 / 23620296
juvenile26 / 55556467
adult261 / 1939121134
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor4 / 34366116
chondrosarcoma8 / 8282396
colorectal tumor4 / 11424635
esophageal tumor11 / 17290636
gastrointestinal tumor13 / 119369108
germ cell tumor132 / 263845500
glioma8 / 10688374
head and neck tumor16 / 136302117
kidney tumor6 / 6895987
leukemia17 / 95842177
liver tumor28 / 96359290
lung tumor2 / 10312719
lymphoma1 / 7175513
non-neoplasia10 / 97250102
normal407 / 3360307121
ovarian tumor8 / 76682104
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS14 / 125680111
prostate cancer7 / 10268068
retinoblastoma3 / 4635664
skin tumor16 / 124949128
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor12 / 90257132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites7 / 40015174
bladder0 / 297570 
blood8 / 12347864
bone5 / 7165569
bone marrow16 / 48801327
brain203 / 1100989184
cervix8 / 48171166
connective tissue13 / 14925587
ear3 / 16212185
embryonic tissue67 / 215722310
esophagus11 / 20209544
eye15 / 21105471
heart10 / 89626111
intestine14 / 23447259
kidney23 / 211777108
larynx2 / 2414582
liver36 / 207743173
lung11 / 33697432
lymph1 / 4427022
lymph node3 / 9161032
mammary gland3 / 15327119
mouth14 / 67052208
muscle8 / 10771574
nerve0 / 157680 
ovary7 / 10205168
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta32 / 280825113
prostate9 / 18934547
salivary gland1 / 2015549
skin22 / 210574104
spleen3 / 5395255
stomach5 / 9661951
testis234 / 330442708
thymus13 / 81131160
thyroid1 / 4747321
tonsil0 / 169990 
trachea7 / 52413133
umbilical cord2 / 13680146
uterus35 / 232878150
vascular17 / 51780328
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209900_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.85
Adipocyte9.75
AdrenalCortex11.5
Adrenalgland8.45
Amygdala10.85
Appendix13
AtrioventricularNode9.75
BDCA4+_DentriticCells10.65
Bonemarrow9.95
BronchialEpithelialCells109.1
CD105+_Endothelial15.75
CD14+_Monocytes11.35
CD19+_BCells(neg._sel.)10
CD33+_Myeloid12.25
CD34+19
CD4+_Tcells11.3
CD56+_NKCells10.8
CD71+_EarlyErythroid9.9
CD8+_Tcells8.75
CardiacMyocytes20.75
Caudatenucleus9
Cerebellum7.95
CerebellumPeduncles11.6
CiliaryGanglion8.6
CingulateCortex10.45
Colorectaladenocarcinoma42.5
DorsalRootGanglion8.65
FetalThyroid9.95
Fetalbrain13.2
Fetalliver9.4
Fetallung8.1
GlobusPallidus7.7
Heart13.55
Hypothalamus11.2
Kidney8.15
Leukemia_chronicMyelogenousK-56227.65
Leukemia_promyelocytic-HL-6054.4
Leukemialymphoblastic(MOLT-4)8
Liver14.8
Lung10.6
Lymphnode7.85
Lymphoma_burkitts(Daudi)30.3
Lymphoma_burkitts(Raji)25
MedullaOblongata8.65
OccipitalLobe9.2
OlfactoryBulb7.9
Ovary6.95
Pancreas13.8
PancreaticIslet10.55
ParietalLobe10.6
Pituitary11.65
Placenta11.95
Pons9.45
PrefrontalCortex12.35
Prostate11.55
Salivarygland8.1
SkeletalMuscle12.85
Skin10.9
SmoothMuscle13.85
Spinalcord11.15
SubthalamicNucleus9.3
SuperiorCervicalGanglion13.75
TemporalLobe9.3
Testis8.65
TestisGermCell19.2
TestisIntersitial8.55
TestisLeydigCell10.4
TestisSeminiferousTubule8.45
Thalamus10.4
Thymus7.4
Thyroid11
Tongue10.9
Tonsil9.75
Trachea8.05
TrigeminalGanglion12.6
Uterus23.05
UterusCorpus9.75
WholeBlood10.2
Wholebrain8.2
colon97.65
pineal_day67.7
pineal_night102.88
retina39.45
small_intestine34.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12290_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.1 ± 0.22
Basal Forebrain8.24 ± 0.16
Basal Part of Pons8.54 ± 0.25
Cerebellar Cortex8.23 ± 0.22
Cerebellar Nuclei8.96 ± 0.44
Claustrum8.26 ± 0.44
Epithalamus9.08 ± 0.46
Frontal Lobe8.4 ± 0.38
Globus Pallidus9.2 ± 0.31
Hypothalamus8.26 ± 0.51
Insula8.21 ± 0.24
Limbic Lobe8.37 ± 0.46
Mesencephalon8.47 ± 0.38
Myelencephalon8.52 ± 0.4
Occipital Lobe8.65 ± 0.51
Parietal Lobe8.27 ± 0.38
Pontine Tegmentum8.49 ± 0.49
Striatum8.87 ± 0.51
Subthalamus8.42 ± 0.37
Temporal Lobe8.34 ± 0.3
Thalamus8.69 ± 0.34
White Matter9.48 ± 0.36
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc16a1CBCerebellum28.12
47.86
Slc16a1CTXCerebral cortex35.9
29.48
Slc16a1HIPHippocampal region30.96
39.59
Slc16a1HPFHippocampal formation36.22
39.97
Slc16a1HYHypothalamus8.12
7.69
Slc16a1LSXLateral septal complex5.28
5.02
Slc16a1MBMidbrain24.9
27.81
Slc16a1MYMedulla33.89
41.68
Slc16a1OLFOlfactory bulb20.38
16.51
Slc16a1PPons28.91
38.01
Slc16a1PALPallidum9.73
10.05
Slc16a1RHPRetrohippocampal region46.71
41.45
Slc16a1sAMYStriatum-like amygdalar nuclei5.21
6
Slc16a1STRStriatum10.34
8.57
Slc16a1STRdStriatum dorsal region12.87
10.72
Slc16a1STRvStriatum ventral region5.58
3.91
Slc16a1THThalamus25
25.12
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00001701 12 225 236 DLHDANTDLIGR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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